New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2085878 =	NA (NA)	5 (0.090)	5/254	NT	NA	intergenic (+587/‑8)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	2085923 =	NA (NA)					coding (38/1302 nt)	PP_1865	transposase

AAGCCCAATGAAACAAGCGACATCAACTTGATAATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2086025‑2085878 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTCC  >  NC_002947/2085923‑2086070                                                                                                                                                                                                                                                                                                          AAGCCCAATGAAACAAGCGACATCAACTTGATAATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGG                                                                                                                                                      <  3:64779/148‑1                      ATCAACTTGATAATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTG                                                                                                                                                       <  2:127942/126‑1                                 AATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTG                                                                                                                                                       <  4:89033/115‑1                                 AATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTG                                                                                                                                                       >  3:89033/1‑115                                                                                                     ACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATT                                                     <  3:286551/145‑1                                                                                                     ACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATT                                                     >  4:286551/1‑145                                                                                                         CGGCGCAATGGCCTGCTCCAAGACAAGTTTGGCCATTACGCTGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTG                                              >  6:147754/1‑148                                                                                                             GCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGC                                          >  5:135919/1‑148                                                                                                                                        GCCATTACGCTGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACT              <  5:147754/149‑1                                                                                                                                                  ctGAGTGTGTCGATCAGGTTTTCGAGGAGCACCGCAAACGGCATTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTT    <  8:167747/147‑1                                                                                                                                                   GGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTC   <  3:153125/149‑1                                                                                                                                                   GGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTC   <  6:120357/149‑1                                                                                                                                                   GGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTC   <  7:48498/149‑1                                                                                                                                                   GGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGATTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTC   >  8:122745/1‑149                                                                                                                                                    GAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTCC  >  2:68045/1‑149                                                                                                                                                    GAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTCC  <  1:292583/149‑1                                                                                                                                                    GAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTCC  >  5:306337/1‑149                                                                                                                                                                                                                                                                                                          AAGCCCAATGAAACAAGCGACATCAACTTGATAATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2086025‑2085878 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTCC  >  NC_002947/2085923‑2086070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.