| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2242181 = | 49 (0.830) | 4 (0.070) | 4/242 | NT | 7.8% | intergenic (+42/‑1) | PP_t29/PP_t30 | tRNA‑Ala/tRNA‑Glu |
| ? | NC_002947 | 2242255 = | 48 (0.870) | noncoding (74/76 nt) | PP_t30 | tRNA‑Glu | |||||
TTATTGAGAAGGGAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCGCAAAACGCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2242335‑2242181‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggggacgCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTTCTCAATAATTTTCCCCCGACAAACGGCCGCAGATTTTGCTTGCCAAAAAATATGATGAGAATAATATTTCGATC > NC_002947/2242255‑2242401 TTATTGAGAAGGTAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCCCAACACTCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTAACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAG < 6:232349/149‑1TTATTGAGAAGGGAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCGCAAAACGCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAG < 1:58192/149‑1 GAAGGGAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCGCAAAACGCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACG > 3:343674/1‑148 GTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCC > 1:126281/1‑149 GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTTCTCAATAATTTTCCCCCGA < 2:126281/149‑1 CGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCG < 7:35827/86‑1 CGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCG > 8:35827/1‑86 GACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTTCTCAATAATTTTCCCCCGACAAACGGCCGCAGATTTTGCTTGCCAAAAAATATGATGAGAATAATATTTCGA < 2:263629/149‑1 GACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTTCTCAATAATTTTCCCCCGACAAACGGCCGCAGATTTTGCTTGCCAAAAAATATGATGAGAATAATATTTCGA < 6:220893/149‑1 CGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTTCTCAATAATTTTCCCCCGACAAACGGCCGCAGATTTTGCTTGCCAAAAAATATGATGAGAATAATATTTCGATC < 5:109766/149‑1 TTATTGAGAAGGGAAAAAACAAAAGGCCCATTCAATAAGCGAATGAGCCTTTAAAGTCCCGCAAAACGCGGGTAAACGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCACTAGACGAAGGGGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2242335‑2242181‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggggacgCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTTCTCAATAATTTTCCCCCGACAAACGGCCGCAGATTTTGCTTGCCAAAAAATATGATGAGAATAATATTTCGATC > NC_002947/2242255‑2242401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |