New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2242181 = | 49 (0.830) | 4 (0.070) | 4/242 | NT | 7.8% | intergenic (+42/‑1) | PP_t29/PP_t30 | tRNA‑Ala/tRNA‑Glu |
? | NC_002947 | 2242255 = | 48 (0.870) | noncoding (74/76 nt) | PP_t30 | tRNA‑Glu |
CTCGTCGATTATTGATGAGCCTTTTGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTTC > NC_002947/2242034‑2242328 | gatcgaaatattattctcatcatattttttggcaagcaaaatctgcggccgtttgtcgggggaaaattattgagaagggaaaaaacaaaaggcccattcaataagcgaatgagcctttaaagtcccgcaaaacgcgggtaaacgtggCg < 5:109766‑M1/2‑1 (MQ=255) cTCGTCGATTATTGATGAGCCTTTTGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACg < 8:194483/149‑1 (MQ=255) tcgaaatattattctcatcatattttttggcaagcaaaatctgcggccgtttgtcgggggaaaattattgagaagggaaaaaacaaaaggcccattcaataagcgaatgagcctttaaagtcccgcaaaacgcgggtaaacgtggCGTc < 2:263629‑M1/4‑1 (MQ=255) tcgaaatattattctcatcatattttttggcaagcaaaatctgcggccgtttgtcgggggaaaattattgagaagggaaaaaacaaaaggcccattcaataagcgaatgagcctttaaagtcccgcaaaacgcgggtaaacgtggCGTc < 6:220893‑M1/4‑1 (MQ=255) gtcgATTATTGATGAGCCTTTTGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTc < 3:305047/148‑1 (MQ=255) gATTATTGATGAGCCTTTTGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCt < 7:91710/149‑1 (MQ=255) attattGATGAGCCTTTTGTTTAGGGGCTATAGCTAAGCTGGGAGAGCGACTGCATGTAATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTGCCCtt > 4:343674/1‑149 (MQ=21) atgaGCCTTTTGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTa < 6:126681/148‑1 (MQ=255) tgaGCCTTTTGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGt > 3:182385/1‑149 (MQ=255) ttGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTa < 4:182385/147‑1 (MQ=255) ttGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAg < 4:116933/148‑1 (MQ=255) ttCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTc > 4:280610/1‑124 (MQ=255) tCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGacac < 1:200558/148‑1 (MQ=255) cTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCtt > 2:151337/1‑149 (MQ=255) aGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAg > 3:92701/1‑125 (MQ=255) aGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAg < 4:92701/125‑1 (MQ=255) aGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCAc > 3:331705/1‑149 (MQ=255) cTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCAcgg > 7:34746/1‑149 (MQ=255) cTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCAcgg < 3:161488/149‑1 (MQ=255) ggAGAGCGCCTGCTTGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACa < 1:151337/149‑1 (MQ=255) ggAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTaa > 6:182770/1‑147 (MQ=255) ggAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTaa < 5:182770/147‑1 (MQ=255) ggAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACa < 8:34746/149‑1 (MQ=255) agagCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAgg > 7:140073/1‑149 (MQ=255) tcgggggaaaattattgagaagggaaaaaacaaaaggcccattcaataagcgaatgagcctttaaagtcccgcaaaacgcgggtaaacgtggCGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc < 2:126281‑M1/57‑1 (MQ=255) tccTGCATGCCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc > 7:110527/2‑149 (MQ=255) gcCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc < 7:295824/149‑1 (MQ=255) cTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc > 2:23118/1‑147 (MQ=255) cTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc < 1:23118/147‑1 (MQ=255) gcatggcatgCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGt > 8:196916/1‑149 (MQ=255) gcatggcatgCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGt > 7:132424/1‑149 (MQ=255) ggcatgCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTcccc > 1:198967/1‑149 (MQ=255) gcatgCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGGTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTcccc < 6:308669/148‑1 (MQ=255) cAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAggg < 7:196916/148‑1 (MQ=255) gggaaaaaacaaaaggcccattcaataagcgaatgagcctttaaagtcccgcaaaacgcgggtaaacgtggCGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAc > 1:126281‑M1/72‑149 (MQ=255) ttCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTAcc > 8:350824/1‑149 (MQ=255) cGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTAccc < 8:132424/148‑1 (MQ=255) gCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTAc < 2:127686/51‑1 (MQ=255) gCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTAc > 1:127686/1‑51 (MQ=255) tCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACt > 1:205372/1‑149 (MQ=255) caccaTTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACt < 2:198967/147‑1 (MQ=255) ccaTTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGc < 2:299866/139‑1 (MQ=255) ccaTTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGc > 1:299866/1‑139 (MQ=255) caTTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTaaa < 2:205372/149‑1 (MQ=255) cgaatgagcctttaaagtcccgcaaaacgcgggtaaacgtggCGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCAcggcg < 7:35827‑M1/44‑1 (MQ=255) cgaatgagcctttaaagtcccgcaaaacgcgggtaaacgtggCGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCAcggcg > 8:35827‑M1/43‑86 (MQ=255) ccAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCa < 4:331705/147‑1 (MQ=255) aGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCg > 3:232545/1‑149 (MQ=255) gTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCtt > 6:96789/1‑149 (MQ=255) cACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTAt < 8:140073/148‑1 (MQ=255) aCGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTAtt < 7:350824/148‑1 (MQ=255) gCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGaa > 6:233605/1‑149 (MQ=255) gCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGaa > 6:109766/1‑149 (MQ=255) gttctGGATTTTCGGGACGGTTTCGTGCCGTTCGTGTAGTGGCCTAGGCCCCCGCCCTTTCCCGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAAt < 2:144353/145‑1 (MQ=18) gTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATggg < 5:96789/149‑1 (MQ=255) gATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAAt > 1:144353/1‑143 (MQ=255) cgcgAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCtttt < 3:136858/146‑1 (MQ=255) gcgAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCg > 3:232834/1‑106 (MQ=255) gcgAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCg < 4:232834/106‑1 (MQ=255) gAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCgg < 2:147616/105‑1 (MQ=255) gAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCgg > 1:147616/1‑105 (MQ=255) aCGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCtt < 8:110527/148‑1 (MQ=255) CGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTtc > 3:343674‑M1/1‑148 (MQ=255) | CTCGTCGATTATTGATGAGCCTTTTGTTTCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCACGTTTACCCGCGTTTTGCGGGACTTTAAAGGCTCATTCGCTTATTGAATGGGCCTTTTGTTTTTTCCCTTC > NC_002947/2242034‑2242328 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |