New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2310780 =	103 (1.750)	6 (0.110)	5/234	NT	6.4%	coding (531/1311 nt)	PP_2033	hypothetical protein
	?	NC_002947	2310845 =	81 (1.520)					coding (596/1311 nt)	PP_2033	hypothetical protein

CCAGCGGGAAGTTATGCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2310931‑2310780 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccacggtgGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGGGTGGTTACCC  >  NC_002947/2310845‑2310992                                                                                                                                                                                                                                                                                                                  CCAGCGGGAAGTTATGCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACG                                                                                                                                                          <  2:154770/149‑1   AGCGGGAAGTTATGCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGT                                                                                                                                                        >  1:202147/1‑149   AGCGGGAAGTTATGCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGT                                                                                                                                                        <  2:366135/149‑1    GCGGGAAGTTATGCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTG                                                                                                                                                       >  6:196274/1‑149     CGGGAAGTTATGCCGCCGCTCGTCCTCGGCCAACAGCTGCACCACGTGCCTCCCCGCAATATCCGCACCCACGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGG                                                                                                                                                         <  1:119835/149‑1             TATGCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTG                                                                                                                                                       <  8:98518/140‑1             TATGCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTG                                                                                                                                                       >  7:98518/1‑140                GCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGC                                                                                                                                                                 <  5:225791/127‑1                GCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGC                                                                                                                                                                 >  6:225791/1‑127                                                                                            ACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCT                                                                  >  5:208266/1‑149                                                                                             CCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTG                                                                 >  5:248975/1‑149                                                                                               GTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGT                                                               >  5:326248/1‑149                                                                                               GTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGT                                                               >  6:200035/1‑149                                                                                                       CGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTG                                                       <  6:208266/149‑1                                                                                                                                        CAATGATCGCCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGA                     <  6:326248/149‑1                                                                                                                                                GCCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGG             <  1:147998/149‑1                                                                                                                                                GCCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGG             <  7:94930/149‑1                                                                                                                                                 CCGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGG            <  2:231349/149‑1                                                                                                                                                  CGCCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGGG           <  6:248975/149‑1                                                                                                                                                    CCACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGGGTG         <  1:161597/149‑1                                                                                                                                                     CACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGGGTGG        >  5:178698/1‑149                                                                                                                                                     CACGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGGGTGG        <  4:84493/149‑1                                                                                                                                                       CGGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGGGTGGTT      <  5:335127/149‑1                                                                                                                                                        GGTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGGGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCAGGGCGTGCACTCGAATATTGGTGGTGGTTA     >  8:280342/1‑149                                                                                                                                                         GTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCGTTGCTGCCGGGCGTGCACTCGAATATTGGGGGTGGTTA     <  1:60935/149‑1                                                                                                                                                         GTGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGGGTGGTTAC    <  1:196415/149‑1                                                                                                                                                          TGGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGG‑CACGTCAACC‑TGCTGCCCGGCGTGCACTCCTAAATTTGGGGTGGacatcc  >  3:259377/1‑143                                                                                                                                                                                                                                                                                                                  CCAGCGGGAAGTTATGCCGCCGCTCGTCCTCGGCCACCAGCTGCACCACGTG‑‑‑CCGGGCAATATCCGCACCCAGGCCCAGGCGCAGGCCACCGTGGCGGCCGTCTGCAGGGTCGAAGTCACCCTGTAAGGGCGCAATGATCGCCGCCACGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2310931‑2310780 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccacggtgGCCTGCGCCTGGGCCTGGGTGCGGATATTGCCCGGCACGTGGTGCAGCTGGTGGCCGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCG‑TGCTGCCGGGCGTGCACTCGAATATTGGGGGTGGTTACCC  >  NC_002947/2310845‑2310992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.