New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2476810 =	108 (1.840)	10 (0.180)	5/244	NT	9.1%	coding (345/699 nt)	PP_2170	chorismate mutase family protein
	?	NC_002947	2476835 =	97 (1.740)					coding (370/699 nt)	PP_2170	chorismate mutase family protein

TTGCGTCACGAGCCTTCCACGTTTGGCGAGAAGCGAAACGAGGCTGCGGTCGATTTCATCGATCCGTTGACGGACTTCGTCCAGAGAGGTGCAAGGTACATCCATTTGCATGACTTCCTTTTCATGAGCCTGCGATTGATTGGAGCAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2476960‑2476810 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggctCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA  >  NC_002947/2476835‑2476982                                                                                                                                                                                                                                                                                                             TTGCGTGACGAGGCTTCAACGTTTCGAGAGAAGCGATACGAGGCTGAGGTAGATTTCATCGATCCGTTGACGGACTTCGTCCAGAGTGGTGCAAGGTACATCCATTTGCATGACTTCCTTTTCATGAGCCTGCGATTGATTGGAGCAGG                                                                                                                                                        <  8:300523/149‑1   GCGTCACGAGCCTTCCACGTTTGGCGAGAAGCGAAACGAGGCTGCGGTCGATTTCATCGATCCGTTGACGGACTTCGTCCAGAGAGGTGCAAGGTAGATCCATTTGCATGACTTCCTTTTCATGAGCCTGCGATTGATTGGAGCAGG                                                                                                                                                        <  8:103902/147‑1   GCGTCACGAGCCTTCCACGTTTGGCGAGAAGCGAAACGAGGCTGCGGTCGATTTCATCGATCCGTTGACGGACTTCGTCCAGAGAGGTGCAAGGTACATCCATTTGCATGACTTCCTTTTCATGAGCCTGCGATTGATTGGAGCAGG                                                                                                                                                        <  2:44115/147‑1   GCGTCACGAGCCTTCCACGTTTGGCGAGAAGCGAAACGAGGCTGCGGTCGATTTCATCGATCCGTTGACGGACTTCGTCCAGAGAGGTGCAAGGTACATCCATTTGCATGACTTCCTTTTCATGAGCCTGCGATTGATTGGAGCAGG                                                                                                                                                        <  4:167152/147‑1                                                                                                                           CATGAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGT                               >  3:115277/1‑148                                                                                                                            ATGAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGA                             >  1:322240/1‑149                                                                                                                            ATGAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGA                             >  2:1110/1‑149                                                                                                                            ATGAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCA                                                                                                                 >  3:86815/1‑65                                                                                                                            ATGAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCA                                                                                                                 <  4:86815/65‑1                                                                                                                              GAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACG                           >  6:131709/1‑149                                                                                                                              GAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTC                                                                                                >  7:48926/1‑80                                                                                                                              GAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTC                                                                                                >  7:54123/1‑80                                                                                                                              GAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTC                                                                                                <  8:48926/80‑1                                                                                                                              GAGCCTGCGATTGATTGGAGCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTC                                                                                                <  8:54123/80‑1                                                                                                                                                 GCAGGCTCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAG         >  3:326030/1‑148                                                                                                                                                       TCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA  >  3:183534/1‑149                                                                                                                                                       TCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA  >  2:64687/1‑149                                                                                                                                                       TCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA  >  2:371597/1‑149                                                                                                                                                       TCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTC                                                   <  1:108664/100‑1                                                                                                                                                       TCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTC                                                   >  2:108664/1‑100                                                                                                                                                                                                                                                                                                             TTGCGTCACGAGCCTTCCACGTTTGGCGAGAAGCGAAACGAGGCTGCGGTCGATTTCATCGATCCGTTGACGGACTTCGTCCAGAGAGGTGCAAGGTACATCCATTTGCATGACTTCCTTTTCATGAGCCTGCGATTGATTGGAGCAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2476960‑2476810 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggctCATGAAAAGGAAGTCATGCAAATGGATGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA  >  NC_002947/2476835‑2476982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.