New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2678441	55 (0.930)	4 (0.070)	4/248	NT	6.4%	coding (782/1320 nt)	PP_2348	sensor histidine kinase
	?	NC_002947	= 2678519	65 (1.150)					coding (860/1320 nt)	PP_2348	sensor histidine kinase

ACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2678289‑2678441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTCACGCATTTGCGCGCGCACCTCCGGCAGACCCTGCAGGCGGTCACTGGAAGCCAGGCTCAGCAACACCGCCAGCGGCGTCTTCAGCGCAT  <  NC_002947/2678519‑2678375                                                                                                                                                                                                                                                                                                            ACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTC                                                                                                                                                       >  1:43237/1‑149   CGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTG                                                                                                                                                     <  7:26929/149‑1    GCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGC                                                                                                                                                    <  7:168293/149‑1                                                             ACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTC                                                                                           >  3:100191/1‑149                                                                                           GCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTCACGCATTTGCGCGCGCACCTCCGGCAGACC                                                             <  4:100191/149‑1                                                                                                  ACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTCACGCATTTGCGCGCGCACCTCCGG                                                                   >  1:337946/1‑136                                                                                                  ACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTCACGCATTTGCGCGCGCACCTCCGG                                                                   <  2:337946/136‑1                                                                                                                                                     CTGCCAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTCACGCATTTGCGCGCGCACCTCCGGCAGACCCTGCAGGCGGTCACTGGAAGCCAGGCTCAGCAACACCGCCAGCGGCGTCTTCAGCGCA   >  6:203810/1‑149                                                                                                                                                      TGCCAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTCACGCATTTGCGCGCGCACCTCCGGCAGACCCTGCAGGCGGTCACTGGAAGCCAGGCTCAGCAACACCGCCAGCGGCGTCTTCAGCGCAT  >  5:58889/1‑149                                                                                                                                                        CCAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTCACGCATTTGCGCGCGCACCTCCGGCAGACCCTGCAGGCGGTCACTGGAAGCCAGGCTCAGCAACACCGCCAGCGGCGTCTTCAGCGCAT  <  3:68465/147‑1                                                                                                                                                                                                                                                                                                            ACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2678289‑2678441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccAGACGTGCACGGTTCAGCTCGCGCGCCAGGCGCTCCTGAATCTGCTGCAACTGCTCACGCATTTGCGCGCGCACCTCCGGCAGACCCTGCAGGCGGTCACTGGAAGCCAGGCTCAGCAACACCGCCAGCGGCGTCTTCAGCGCAT  <  NC_002947/2678519‑2678375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.