New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2680661	54 (0.920)	5 (0.090)	5/242	NT	9.1%	coding (594/867 nt)	PP_2350	LysR family transcriptional regulator
	?	NC_002947	= 2680746	49 (0.890)					coding (509/867 nt)	PP_2350	LysR family transcriptional regulator

TGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGTAGCCACTGCCACCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2680519‑2680661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgggTCGAGCGGCCCGAGCCGTACATCTACATCGACTGGGGCGAGGCCTTCCGCCGCCAGCATGATGCCGCCCTGCCCGACTGCGCGCGCCCGGCGCTTAGTTTCAACCTTGGCCCGTTGGCCCTGCAGTTCATACTCGACCAAGGTGG  <  NC_002947/2680746‑2680602                                                                                                                                                                                                                                                                                                  TGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGTAGCCACTGCCACCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGTCGAGC                                                                                                                                             >  2:208305/1‑149                                                                              CCACTGCCACCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGTCGAGCGGCCCGAGCCGTACATCTACATCGACTGGGGCGAGGCCTTCCGCCGCCAGCATGATGCCGCCCTGCCCGA                                                                       >  5:163354/1‑142                                                                              CCACTGCCACCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGTCGAGCGGCCCGAGCCGTACATCTACATCGACTGGGGCGAGGCCTTCCGCCGCCAGCATGATGCCGCCCTGCCCGA                                                                       <  6:163354/142‑1                                                                                            GTCGAGTATGAACTGCCGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGTCGAGCGGCCCTAGCCGTACATCTACATTGACTGGGGCGAGGCCTTCCGCCGCCAGCATGATGCCGCCCTGCCCGACTGCGCGCGCCCGGCGCTTA                                                   <  1:218046/148‑1                                                                                             TCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGTCGAGCGGCCCGAGCCGTACATCTACATCGACTGGGGCGAGGCCTTCCGCCGCCAGCATGATGCCGCCCAGCCCGACTGCGCGCGCCCGGCGCTTAGT                                                 <  1:208305/149‑1                                                                                                                                          GCCGGGTCGAGCGGCCCGAGCCGTACATCTACATCGACTGGGGCGAGGCCTTCCGCCGCCAGCATGATGCCGCCCTGCCCGACTGCGCGCGCCCGGCGCTTAGTTTCAACCTTGGCCCGTTGGCCCTGCAGTTCATACTCGACCAAGGT    >  7:289692/1‑149                                                                                                                                            CGGGTCGAGCGGCCCGAGCCGTACATCTACATCGACTGGGGCGAGGCCTTCCGCCGCCAGCATGATGCCGCCCTGCCCGACTGCGCGCGCCCGGCGCTTAGTTTCAACCTTGGCCCGTTGGCCCTGCAGTTCATACTCGACCAAGGTGG  >  2:172229/1‑149                                                                                                                                                                                                                                                                                                  TGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGTAGCCACTGCCACCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2680519‑2680661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgggTCGAGCGGCCCGAGCCGTACATCTACATCGACTGGGGCGAGGCCTTCCGCCGCCAGCATGATGCCGCCCTGCCCGACTGCGCGCGCCCGGCGCTTAGTTTCAACCTTGGCCCGTTGGCCCTGCAGTTCATACTCGACCAAGGTGG  <  NC_002947/2680746‑2680602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.