New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2680661	54 (0.920)	5 (0.090)	5/242	NT	9.1%	coding (594/867 nt)	PP_2350	LysR family transcriptional regulator
	?	NC_002947	= 2680746	49 (0.890)					coding (509/867 nt)	PP_2350	LysR family transcriptional regulator

CCACCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGATTCTCCGTCGCTGACCTCGCTGCG  >  NC_002947/2680602‑2680891                                                                                                                                                 |                                                                                                                                                  ccACCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGAcccg                                                                                                                                               >  2:172229‑M2/1‑145 (MQ=255)   aCCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGAcccggc                                                                                                                                             >  7:289692‑M2/1‑143 (MQ=255)             aGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGaa                                                                                                                                    >  5:174770/1‑148 (MQ=255)              gTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAAt                                                                                                                                   >  3:173567/1‑148 (MQ=255)               tATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAAt                                                                                                                                   >  1:238678/1‑147 (MQ=255)                 tGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAg                                                                                                                                <  3:171170/148‑1 (MQ=255)                          gggCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTcc                                                                                                                      <  7:204646/149‑1 (MQ=255)                           ggCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCa                                                                                                                     >  5:360278/1‑149 (MQ=255)                           ggCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCa                                                                                                                     <  8:312362/149‑1 (MQ=255)                            gCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCAt                                                                                                                    <  7:45753/149‑1 (MQ=255)                             ccAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATc                                                                                                                   <  6:192645/149‑1 (MQ=255)                             ccAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATc                                                                                                                   <  2:15392/149‑1 (MQ=255)                                     ccAAGGTTGAAACTACGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTc                                                                                                           >  6:314682/1‑149 (MQ=255)                                        aGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCAc                                                                                                        <  1:132685/149‑1 (MQ=255)                                        aGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCAc                                                                                                        >  7:214572/1‑149 (MQ=255)                                                aCTAAGCGCCGGGCGCGCGCAGTCGGGCTGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGAcccggcgcttagtttcaaccttggcccgttggccctgcagttcatactcga                                                                                                <  1:208305‑M2/149‑52 (MQ=255)                                                  tAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCAATGTAGATGTACGGCTAGGGCCGCTCGAcccggcgcttagtttcaaccttggcccgttggcccggcagttcatactcgac                                                                                               <  1:218046‑M2/148‑53 (MQ=255)                                                       gcCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGAcc                                                                                         >  2:57472/1‑149 (MQ=255)                                                          gggCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCg                                                                                        >  2:29448/1‑147 (MQ=255)                                                          gggCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCg                                                                                        >  2:304926/1‑147 (MQ=255)                                                           ggCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAg                                                                                     <  6:360278/149‑1 (MQ=255)                                                           ggCGCGCGCAGTCGGGCAGGGCGGCATCATGATGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGAGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAg                                                                                     >  4:158817/1‑149 (MQ=255)                                                             cgcgcgcAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGt                                                                                   <  7:355361/149‑1 (MQ=255)                                                                  gcAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCt                                                                              <  8:214572/149‑1 (MQ=255)                                                                   cAGTCGTGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTa                                                                                      <  1:362976/140‑1 (MQ=255)                                                                   cAGTCGTGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTa                                                                                      >  2:362976/1‑140 (MQ=255)                                                                      tCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGAcccggcgcttagtttcaaccttggcccgttggccctgcagttcatactcgaccaaggtggcagtgg                                                                                 <  6:163354‑M2/142‑67 (MQ=255)                                                                      tCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGAcccggcgcttagtttcaaccttggcccgttggccctgcagttcatactcgaccaaggtggcagtgg                                                                                 >  5:163354‑M2/1‑76 (MQ=255)                                                                        gggCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAg                                                                         <  6:174770/148‑1 (MQ=255)                                                                           cAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCa                                                                     <  1:29448/149‑1 (MQ=255)                                                                             gggCGGCATAATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAgc                                                                   >  8:172426/1‑149 (MQ=255)                                                                              ggcggcATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGTCCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAgcg                                                                  >  1:201872/1‑149 (MQ=255)                                                                              ggcggcATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAgcg                                                                  >  3:139183/1‑149 (MQ=255)                                                                                cggcATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGcgcg                                                                <  1:57472/149‑1 (MQ=255)                                                                                  gcATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTgg                                                                                            >  4:324568/1‑119 (MQ=255)                                                                                  gcATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTgg                                                                                            <  3:324568/119‑1 (MQ=255)                                                                                     tcatGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATTAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTc                                                           <  2:242720/149‑1 (MQ=255)                                                                                       atGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCa                                                         >  7:325867/1‑149 (MQ=255)                                                                                           tGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATc                                                                                                                   <  5:126183/87‑1 (MQ=255)                                                                                           tGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATc                                                                                                                   >  6:126183/1‑87 (MQ=255)                                                                                           tGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCa                                                         <  4:310591/145‑1 (MQ=255)                                                                                           tGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCa                                                         >  3:310591/1‑145 (MQ=255)                                                                                                   ggaGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCAtct                                             <  5:123371/147‑1 (MQ=255)                                                                                                     aGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCg                                           >  8:146420/1‑149 (MQ=255)                                                                                                                cAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCgcag                                >  4:336775/1‑149 (MQ=255)                                                                                                                 aGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGc                                                                               <  1:305800/101‑1 (MQ=255)                                                                                                                 aGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGc                                                                               >  2:305800/1‑101 (MQ=255)                                                                                                                     gatgtagatgtaCGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCagcagc                            >  6:125765/1‑148 (MQ=255)                                                                                                                      atgttgacgtaCGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTTGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGa                          <  3:215315/149‑1 (MQ=255)                                                                                                                          agatgtaCGGCTCGGGACGATCGACCCGGCGCACGCCAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTCGGTCGGCTGTTAGACCAGAGCGGCGTCAAGCAAGCCCATCTCGACATTGCGCAGCAGCGaagct                      >  5:254300/1‑145 (MQ=255)                                                                                                                            atgtaCGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGATTCTcc                    <  5:164123/149‑1 (MQ=255)                                                                                                                                aCGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGATTCTCCGTCg                >  3:197030/1‑149 (MQ=255)                                                                                                                                    cTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGATTCTCCGTCGCTGa            <  7:146420/149‑1 (MQ=255)                                                                                                                                         gCCGCTCGTCCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGATTCTCCGTCGCTGACCTCg       <  2:201872/149‑1 (MQ=255)                                                                                                                                            gCTCGAcccggcgcttagtttcaaccttggcccgttggccctgcagttcatactcgaccaaggtggcagtggctacttccgcacgcgggtggtgcaggcctatctggacagcggcgtgttcgagcgggtaccgcaggcaccggagttca    >  2:208305‑M2/1‑6 (MQ=255)                                                                                                                                            gCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGATTCTCCGTCGCTGACCTCGCTg    <  5:314682/149‑1 (MQ=255)                                                                                                                                              tCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGATTCTCCGTCGCTGACCTCGCTGCg  >  6:140928/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CCACCTTGGTCGAGTATGAACTGCAGGGCCAACGGGCCAAGGTTGAAACTAAGCGCCGGGCGCGCGCAGTCGGGCAGGGCGGCATCATGCTGGCGGCGGAAGGCCTCGCCCCAGTCGATGTAGATGTACGGCTCGGGCCGCTCGACCCGGCGCACGCGAATCAGCTTCTCTTCCATCAACTGCTCCACCTGCAGGCCTGGACCGTAGGTCGGCTGGTAGACCAGCGCGGCGTCCAGCAAGCCCATCTCGACCTTGCGCAGCAGCGATTCTCCGTCGCTGACCTCGCTGCG  >  NC_002947/2680602‑2680891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.