New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2724592	53 (0.900)	3 (0.050)	3/250	NT	5.5%	intergenic (‑1/+147)	azlC/PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
	?	NC_002947	= 2724623	52 (0.910)					intergenic (‑32/+116)	azlC/PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein

GCCTCGATGGCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2724482‑2724592 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgCTGGCCTGCCTCGTAGCCGTCATGCAGCCATCATGCCCCACATCGCCCGCCAAGCCTTTCTTCACGGCGCCATTGCCATTCTCCCGTTGTCCCTGGCCGTTGCCCCTTGGGGCCTGCTGGCCGGATCCATGGCCATCGAGGCCAAC  <  NC_002947/2724623‑2724478                                                                                                                                                                                                                                                                   GCCTTGATGGCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGCTGGCCTGCCTCGTAGCCGTCATGCAGCCATCATGCC                                                                                                               <  5:351140/148‑1               GGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGCTGGCCTGCCTCGTAGCCGTCATGCAGCCATCATG                                                                                                                 <  5:188165/132‑1               GGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGCTGGCCTGCCTCGTAGCCGTCATGCAGCCATCATG                                                                                                                 >  6:188165/1‑132                                                                                                             ATGCTGGCCTGCCTCGTAGCCGTCATGCAGCCATCATGCCCCACATCGCCCGCCAAGCCTTTCTTCACGGCGCCATTGCCATTCTCCCGTTGTCCCTGGCCGTTGCCCCTTGGGGCCTGCTGGCCGGATCCATGGCCATCGAGGCCAAC  <  4:231478/149‑1                                                                                                             ATGCTGGCCTGCCTCGTAGCCGTCATGCAGCCATCATGCCCCACATCGCCCGCCAAGCCTTTCTTCACGGCGCCATTGCCATTCTCCCGTTGTCCCTGGCCGTTGCCCCTTGGGGCCTGCTGGCCGGATCCATGGCCATCGAGGCCAAC  <  8:254343/149‑1                                                                                                                                                                                                                                                                   GCCTCGATGGCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2724482‑2724592 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgCTGGCCTGCCTCGTAGCCGTCATGCAGCCATCATGCCCCACATCGCCCGCCAAGCCTTTCTTCACGGCGCCATTGCCATTCTCCCGTTGTCCCTGGCCGTTGCCCCTTGGGGCCTGCTGGCCGGATCCATGGCCATCGAGGCCAAC  <  NC_002947/2724623‑2724478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.