New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2724592 | 53 (0.900) | 3 (0.050) | 3/250 | NT | 5.5% | intergenic (‑1/+147) | azlC/PP_2386 | branched‑chain amino acid transport protein AzlC/hypothetical protein |
? | NC_002947 | = 2724623 | 52 (0.910) | intergenic (‑32/+116) | azlC/PP_2386 | branched‑chain amino acid transport protein AzlC/hypothetical protein |
GTTGGCCTCGATGGCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTCAGCAGCTGTTGC > NC_002947/2724478‑2724766 | gTTGGCCTCGATGGCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGcat < 8:254343‑M2/149‑4 (MQ=255) gTTGGCCTCGATGGCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGcat < 4:231478‑M2/149‑4 (MQ=255) tCGATGGCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGAc > 4:155286/1‑149 (MQ=255) ggCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACgggg > 5:313256/1‑148 (MQ=255) ccATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAg > 7:302876/1‑149 (MQ=255) cATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAgg < 7:272006/149‑1 (MQ=255) tCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATgg > 7:146702/1‑149 (MQ=255) tCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATgg < 2:319678/149‑1 (MQ=255) cagGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATAGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGa > 2:76833/1‑149 (MQ=255) cccAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGaa < 4:5146/141‑1 (MQ=255) cccAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGaa > 3:5146/1‑141 (MQ=255) ccAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGAc < 7:125318/116‑1 (MQ=255) ccAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGAc > 8:125318/1‑116 (MQ=255) aaGGGGCAACGTCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGCCGGATAAGAGGCAGGCCAGCATGACAGACGGGGCAGGGTATGGCTTGACCGATCTAGCtc > 2:366422/1‑148 (MQ=255) aaGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTg < 3:231478/149‑1 (MQ=255) aaGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTg < 6:313256/149‑1 (MQ=255) aGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTgg > 1:7836/1‑149 (MQ=255) aCGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGc < 4:208420/149‑1 (MQ=255) ccAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGAt < 6:260575/130‑1 (MQ=255) ccAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGAt > 5:260575/1‑130 (MQ=255) ccAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTCCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCgtgt < 1:118150/149‑1 (MQ=255) ggACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTgg < 6:199217/134‑1 (MQ=255) ggACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTgg > 5:199217/1‑134 (MQ=255) ggACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGt < 5:128284/149‑1 (MQ=255) ggACAACGGGAGAATAGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGt < 1:76833/149‑1 (MQ=255) aaCGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTg < 2:94077/126‑1 (MQ=255) aaCGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTg > 1:94077/1‑126 (MQ=255) caatggcGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAg > 6:280053/1‑122 (MQ=255) caatggcGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAg < 5:280053/122‑1 (MQ=255) caatggcGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGcc > 1:117784/1‑148 (MQ=255) gcCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGaca < 3:173680/149‑1 (MQ=255) ccGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGCCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTAGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGacaa < 1:366422/149‑1 (MQ=255) ttaagaaAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATTGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAg < 8:146702/147‑1 (MQ=255) gaaAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCa < 1:131782/127‑1 (MQ=255) gaaAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCa > 2:131782/1‑127 (MQ=255) gaaAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGcc > 8:337554/1‑149 (MQ=255) gaaAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGcc > 3:166650/1‑149 (MQ=255) gCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAg < 8:171754/140‑1 (MQ=255) gCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAg > 7:171754/1‑140 (MQ=255) gCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCGAg > 3:335644/1‑149 (MQ=255) gcgggcgATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAggcgg < 3:155286/148‑1 (MQ=255) tgtgGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCCTTGCGGccctgttgt < 2:7836/149‑7 (MQ=255) ggCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGcatgccccacatcgcccgccaagcctttcttcacggcgccattgccattctcccgttgtccctggccgttgccccttggggcctgctggccggatccatggccatcaaggc < 5:351140‑M2/148‑112 (MQ=255) gCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTg > 3:247490/1‑149 (MQ=255) cATGATGGCTGCATGACGGCTACGAGGCAGGCCAGcatgccccacatcgcccgccaagcctttcttcacggcgccattgccattctcccgttgtccctggccgttgccccttggggcctgctggccggatcc < 5:188165‑M2/132‑98 (MQ=255) cATGATGGCTGCATGACGGCTACGAGGCAGGCCAGcatgccccacatcgcccgccaagcctttcttcacggcgccattgccattctcccgttgtccctggccgttgccccttggggcctgctggccggatcc > 6:188165‑M2/1‑35 (MQ=255) cATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTgg < 7:337554/149‑1 (MQ=255) cATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTgg < 4:166650/149‑1 (MQ=255) gatgGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGcccc < 6:378471/134‑1 (MQ=255) gatgGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGcccc > 5:378471/1‑134 (MQ=255) tGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGggc > 7:84920/1‑149 (MQ=255) tGACGGCTACGAGGCAGGCCAGCATGACTGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCt < 8:102559/149‑1 (MQ=255) aCGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTg < 2:248494/148‑1 (MQ=255) tACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTcag > 1:108481/1‑148 (MQ=255) tACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTcag > 8:53559/1‑148 (MQ=255) tACGAGGCAGGCCAGCATGACAGAAGGGGAAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGCGCCGCAAGGCGGCCCCTAATGACCCTGGGTTATGGGCGGCTGGTcag > 2:221379/1‑148 (MQ=255) cGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTcag < 2:108481/146‑1 (MQ=255) aggcCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCGAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTCAGCAGCTGTTg < 4:335644/149‑1 (MQ=255) ggcCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTCAGCAGCTGTTgc < 7:254343/149‑1 (MQ=255) gcCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTca > 7:282031/1‑137 (MQ=255) gcCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTca < 8:282031/137‑1 (MQ=255) | GTTGGCCTCGATGGCCATGGATCCGGCCAGCAGGCCCCAAGGGGCAACGGCCAGGGACAACGGGAGAATGGCAATGGCGCCGTGAAGAAAGGCTTGGCGGGCGATGTGGGGCATGATGGCTGCATGACGGCTACGAGGCAGGCCAGCATGACAGACGGGGCAGGGGATGGCTTGAACGATCTTGCTGGTCGAGGCGTGTTCGTCTCAACCTCAGTGGCCAACTGACAACAGGGCCGCAAGGCGGCCCCGAATGACCCTGGGTTATGGGCGGCTGGTCAGCAGCTGTTGC > NC_002947/2724478‑2724766 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |