New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3245851 =	70 (1.190)	4 (0.070)	4/244	NT	6.8%	coding (106/879 nt)	PP_2841	site‑specific recombinase
	?	NC_002947	3245906 =	44 (0.790)					coding (161/879 nt)	PP_2841	site‑specific recombinase

AACAGCTGCTCGTGGTCGATCAGGCCCTGACGCCAGGCCTCGTTCATCACCCCGCGAATCGCGTTGACGTACAGCGACGAGCTGTTGGGCGCGAAGCCATCGGCACGCAGGGCAGCCACCAGTGCAATCACATGGCCCGGCTCGAGCCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3246002‑3245851 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgatgGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCACGAGCAGCTGTTGCGTATTCGCGAGGTCAAGCCGGCCACGGGCAGCCGCTTGCCGCCAGGG  >  NC_002947/3245906‑3246051                                                                                                                                                                                                                                                                                                            AACAGCTGCTCGTGGTCGATCAGGCCCTGACGCCAGGCCTCGTTCATCACCCCGCGAATCGCGTTGACGTACAGCGACGAGCTGTTGGGCGCGAAGCCATCGGCACGCAGGGCAGCCACCAGTGCAATCACATGGCCCGGCTCGAGCC                                                                                                                                                        >  1:293731/1‑148   CAGCTGCTCGTGGTCGATCAGGCCCTGACGCCAGGCCTCGTTCATCACCCCGCGAATCGCGTTGACGTACAGCGACGAGCTGTTGGGCGCGAAGCCATCGGCACGCAGGGCAGCCACCAGTGCAATCACATGGCCCGGCTCGAGCCGAT                                                                                                                                                     <  8:54664/149‑1                                                                                              AAGCCATCGGCACGCAGGGCAGCCACCAGTGCAATCACATGGCCCGGCTCGAGCCGATGGCTTCGCGCCAAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCACGAG                                                           >  8:15322/1‑148                                                                                                   ATCGGCACGCAGGGCAGCCACCAGTGCAATCACATGGCCCGGCTCGAGCCGATGGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGG                                                                            >  5:94136/1‑126                                                                                                   ATCGGCACGCAGGGCAGCCACCAGTGCAATCACATGGCCCGGCTCGAGCCGATGGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGG                                                                            <  6:94136/126‑1                                                                                                                                  ACATGGCCCGGCTCGAGCCGATGGCTTCGCGCCTAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCACGAGCAGCTGTTGCGTATTCGCGAGGTCAAGCCGGCCACG                       <  7:15322/148‑1                                                                                                                                                    CGATGGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCACGAGCAGCTGTTGCGTATTCGCGAGGTCAAGCCGGCCACGGGCAGCCGCTTGCCGCCAG    >  2:89463/1‑149                                                                                                                                                     GATGGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCAC                                                              >  5:9600/1‑90                                                                                                                                                     GATGGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCAC                                                              <  6:9600/90‑1                                                                                                                                                      ATGGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCACGAGCAGCTGTTGCGTATTCGCGAGGTCAAGCCGGCCACGGGCAGCCGCTTGCCGCCAGGG  >  5:184742/1‑149                                                                                                                                                      ATGGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCACGAGCAGCTGTTGCGTATTCGCGAGGTCAAGCCGGCCACGGGCAGCCGCTTGCCGCCAGGG  >  5:25879/1‑149                                                                                                                                                                                                                                                                                                            AACAGCTGCTCGTGGTCGATCAGGCCCTGACGCCAGGCCTCGTTCATCACCCCGCGAATCGCGTTGACGTACAGCGACGAGCTGTTGGGCGCGAAGCCATCGGCACGCAGGGCAGCCACCAGTGCAATCACATGGCCCGGCTCGAGCCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3246002‑3245851 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgatgGCTTCGCGCCCAACAGCTCGTCGCTGTACGTCAACGCGATTCGCGGGGTGATGAACGAGGCCTGGCGTCAGGGCCTGATCGACCACGAGCAGCTGTTGCGTATTCGCGAGGTCAAGCCGGCCACGGGCAGCCGCTTGCCGCCAGGG  >  NC_002947/3245906‑3246051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.