New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3345580	47 (0.800)	3 (0.060)	3/236	NT	6.9%	coding (920/1371 nt)	PP_2942	two‑component system response regulator
	?	NC_002947	= 3345648	38 (0.710)					coding (852/1371 nt)	PP_2942	two‑component system response regulator

TGCTGGGTCATACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3345423‑3345580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccttgagccCATGAAAGATGCCGCGCGCCTGATCCTGCATCACCAGGAGCACTGGGACGGCAGCGGTTTCCCCGACCGGCTCAAGGGTGAAGCTATCCCGTTCGGCGCTCGCTTGCTCAAGCTGGCCGTGGACTTCGTTGAGCTGCAA  <  NC_002947/3345648‑3345510                                                                                                                                                                                                                                                                                                           TGCTGGGTCATACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCAC                                                                                                                                                      <  1:271219/149‑1  GCTGGGTCATACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCAC                                                                                                                                                      <  4:349500/148‑1   CTGGGTCATACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCC                                                                                                                                                    <  5:279042/149‑1          ATACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCC                                                                                                                                             >  3:338503/1‑149                                                                   CCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCCATGAAAGATGCCGCGCGCCTGATCCTGCATCACCAGGAGCACTGGGACGGCAGCGG                                                                                    >  7:215114/1‑149                                                                                       GTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCCATGAAAGATGCCGCGCGCCTGATCCTGCATCACCAGGAGCACTGGGACGGCAGCGGTTTCCCCGACCGGCTCAAGG                                                                <  8:215114/149‑1                                                                                        TTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCCATGAAAGATGCCGCGCGCCTGATCCTGCATCACCAGGAGCACTGGGACGGCAGCGGTTTCCCCGACCGGCTCAAGGG                                                               <  4:338503/149‑1                                                                                                                                                     CCCTTGAGCCCATGAAAGATGCCGCGCGCCTGATCCTGCATCACCAGGAGCACTGGGACGGCAGCGGTTTCCCCGACCGGCTCAAGGGTGAAGCTATCCCGTTCGGCGCTCGCTTGCTCAAGCTGGCCGTGGACTTCGTTGAGCTGCAA  >  2:87681/1‑149                                                                                                                                                                                                                                                                                                           TGCTGGGTCATACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3345423‑3345580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccttgagccCATGAAAGATGCCGCGCGCCTGATCCTGCATCACCAGGAGCACTGGGACGGCAGCGGTTTCCCCGACCGGCTCAAGGGTGAAGCTATCCCGTTCGGCGCTCGCTTGCTCAAGCTGGCCGTGGACTTCGTTGAGCTGCAA  <  NC_002947/3345648‑3345510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.