| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3345580 | 47 (0.800) | 3 (0.060) | 3/236 | NT | 6.9% | coding (920/1371 nt) | PP_2942 | two‑component system response regulator |
| ? | NC_002947 | = 3345648 | 38 (0.710) | coding (852/1371 nt) | PP_2942 | two‑component system response regulator | |||||
ATACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAGCGGTCGCGGTCGCTGTGCATCAACTG > NC_002947/3345432‑3345725 | aTACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCC > 3:338503‑M1/1‑149 (MQ=255) tACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCg > 4:1003/1‑149 (MQ=255) aCCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCg < 2:88999/149‑1 (MQ=255) cggccggcGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCggg < 2:301936/149‑1 (MQ=255) tACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCt > 5:150028/1‑149 (MQ=255) aCTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACACCGTTGCAGCTCAACGAAGTCAACGGACAGCTTGAGCAACCGCGCGACGAACGGGATAGCTTCAACCTTGAGACGGTCGGGGAAAACTCTg > 4:45742/1‑149 (MQ=255) cTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTg < 6:42345/148‑1 (MQ=255) tAGACCAAGTCCTCGTCACTGTTCATCTTCCGTTGAAGAATGAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGt < 3:45742/148‑1 (MQ=255) gCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTcc > 4:176743/1‑149 (MQ=255) gCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTcc > 1:87681/1‑149 (MQ=255) aaGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTg < 6:289733/149‑1 (MQ=255) ggCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGt > 1:64247/1‑149 (MQ=255) ccTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGa < 2:221749/149‑1 (MQ=255) gTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCa < 3:1003/149‑1 (MQ=255) gTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCa < 6:150028/149‑1 (MQ=255) cACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAg > 6:41462/1‑148 (MQ=255) aCTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGa < 8:13659/149‑1 (MQ=255) tGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGAt > 8:261594/1‑148 (MQ=255) tCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGCCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAg < 6:178943/148‑1 (MQ=255) ccGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCcatgaaagatgccgcgcgcctgatcctgcatcaccaggagcactgggacggcagcgg > 7:215114‑M1/1‑92 (MQ=255) ttCAAGAATCAAACCCCGTTGCAGCTCATCGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCAt > 1:208721/1‑149 (MQ=255) ttCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCAt > 3:125879/1‑149 (MQ=255) ttCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCAt > 4:133498/1‑149 (MQ=255) cAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATc < 6:62711/148‑1 (MQ=255) aaGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAAc > 5:82560/1‑98 (MQ=255) aaGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAAc < 6:82560/98‑1 (MQ=255) aaGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAgg < 6:208779/130‑1 (MQ=255) aaGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAgg > 5:208779/1‑130 (MQ=255) gAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTc < 4:160266/149‑1 (MQ=255) tCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATg > 1:346483/1‑149 (MQ=255) gTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCcatgaaagatgccgcgcgcctgatcctgcatcaccaggagcactgggacggcagcggtttccccgaccggctcaagg < 8:215114‑M1/149‑78 (MQ=255) ttGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCcatgaaagatgccgcgcgcctgatcctgcatcaccaggagcactgggacggcagcggtttccccgaccggctcaaggg < 4:338503‑M1/149‑79 (MQ=255) ttGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGggctcaaggg > 2:87681‑M2/1‑139 (MQ=255) aGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGtcat < 3:176743/149‑1 (MQ=255) cTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTATAGGTGATGCAGGATCAGGCGCGCGGCATCTTTAATGGGCTCAAGGGtcat > 1:304477/1‑147 (MQ=255) aaCGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATcag > 8:284343/1‑147 (MQ=255) aaCGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATcag > 2:183913/1‑147 (MQ=255) aaCGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATcag < 2:312448/147‑1 (MQ=255) aaCGAAGTACACGGCCAGCTTGAGCAAGCGAGCTCCGAACGGGATAGCTTCAACCTTGAGACGTTCGTGTAAACCTCTGCCGTCACAGTGCTACTTGTGATGCAGGATCAGGCGCGCGGCATCTTTCAGTGGATCAAGGGTCATcagca > 6:54762/1‑149 (MQ=255) cACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCCGCATCTTTCATGGGCTCAACGCTCATCAGCAGCGCTTCAc > 1:220684/1‑149 (MQ=255) gCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTg < 2:64247/149‑1 (MQ=255) gCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGt > 5:199684/1‑149 (MQ=255) cTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTg > 7:189792/1‑149 (MQ=255) tGAGAAAGCTATCTCAGAACGTGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCGAGTGCTCCTTGTTATGCAGTATCAGGCGAGCGGCATCTTTAATGGGCTAAAGGGTAATCAGCAGCGCTTCACTTTGGCGTgg < 5:54762/148‑1 (MQ=255) gAGCAAGCGAGCGCCGAAGGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCTGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTgg < 1:360500/147‑1 (MQ=255) aaGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTc < 2:346483/149‑1 (MQ=255) gcCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCttt < 5:327972/93‑1 (MQ=255) gcCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCttt > 6:327972/1‑93 (MQ=255) aaCGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTgg > 7:355243/1‑131 (MQ=255) aaCGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTgg < 8:355243/131‑1 (MQ=255) cTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAGcggtcgcggtcg > 2:244743/1‑146 (MQ=255) cTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAGcggtcgcggtcg < 1:244743/146‑1 (MQ=255) cccTTGAGCCcatgaaagatgccgcgcgcctgatcctgcatcaccaggagcactgggacggcagcggtttccccgaccggctcaagggtgaagctatcccgttcggcgctcgcttgctcaagctggccgtggacttcgttgagctgcaa > 2:87681‑M1/1‑10 (MQ=255) cccTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGggctcaagggtgaagctatcccgttcggcgctcgcttgctcaagctggccgtggacttcgttgagctgcaa < 4:338503‑M2/149‑72 (MQ=255) ccTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGggctcaagggtgaagctatcccgttcggcgctcgcttgctcaagctggccgtggacttcgttgagctgcaac < 8:215114‑M2/149‑73 (MQ=255) ccTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAGCGGTCGCGGTCGCTGTGCAt > 3:362136/1‑148 (MQ=255) ttGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAGCGGTCGCGGTCGCTGTGCATCaa > 1:163553/1‑149 (MQ=255) aGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAg < 6:158061/123‑1 (MQ=255) aGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAg > 5:158061/1‑123 (MQ=255) aGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAGCGGTCGCGGTCGCTGTGCATCAACTg < 3:133498/149‑1 (MQ=255) | ATACAACCGGCCGGCGTACTTGCGCAGGTAGAGCAAGGCCTCGTCACTGTTCATCTGCCGTTCAAGAATCAAACCCCGTTGCAGCTCAACGAAGTCCACGGCCAGCTTGAGCAAGCGAGCGCCGAACGGGATAGCTTCACCCTTGAGCCGGTCGGGGAAACCGCTGCCGTCCCAGTGCTCCTGGTGATGCAGGATCAGGCGCGCGGCATCTTTCATGGGCTCAAGGGTCATCAGCAGCGCTTCACTTTGGCGTGGGTAGTCGCGATAGCGGTCGCGGTCGCTGTGCATCAACTG > NC_002947/3345432‑3345725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |