New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3649022 =	48 (0.820)	4 (0.070)	4/248	NT	8.3%	intergenic (+499/+1192)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
	?	NC_002947	3649066 =	42 (0.740)					intergenic (+543/+1148)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase

AATAACCGTCGAGCAACTGGCCAGCTGGCTGCAGGAAGACGGCACAGTAGTGCTGGACTTCACCGCCAGTGCCAATTACGTCAAGCGCCATATCCCGGGCGCGTACTGGGCGATCCGTACCCAGCTGGCCGACGCCCT‑GGAACGGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3649172‑3649022 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCATTC  >  NC_002947/3649066‑3649213                                                                                                                                                                                                                                                                                                              AATAACCGTCGAGCAACTGGCCAGCTGGCTGCAGGAAGACGGCACAGTAGTGCTGGACTTCACCGCCAGTGCCAATTACGTCAAGCGCCATATCCCGGGCGCGTACTGGGCTATCCTTACCCAGCTGGCCGACGCCCT‑GGAACGGCCGC                                                                                                                                                        >  8:259577/1‑149  ATAACCGTCGAGCAACTGGCCAGCTGGCTGCAGGAAGACGGCACAGTAGTGCTGGACTTCACCGCCAGTGCCAATTACGTCAAGCGCCATATCCCGGGCGCGTACTGGGCGATCCGTACCCAGCTGGCCGACGCCCT‑GGAACGGCCGCC                                                                                                                                                       >  3:217343/1‑149                                                                                                       GTACTGGGCGATCCGTACCCAGCTGGCCGACGCCCT‑GGAACGGCCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGAC                                                  >  5:38717/1‑149                                                                                                           TGGGCGATCCGTACCCAGCTGGCCGACGCCCT‑GGAACGGCCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGT                                               >  5:337183/1‑148                                                                                                             GGCGATCCGTACCCAGCTGGCCGACGCCCTGGGAACGGCCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTA                                             >  1:38831/1‑149                                                                                                                    CGTACCCAGCTGGCCGACGCCCT‑GGAACGGCCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTG                                     <  6:337183/149‑1                                                                                                                                                     GCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCA     >  3:2018/1‑149                                                                                                                                                     GCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCA     <  6:368747/149‑1                                                                                                                                                     GCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGACCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCC      <  5:107296/148‑1                                                                                                                                                      CCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCAT    >  2:334203/1‑149                                                                                                                                                        CAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCATCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCATTC  <  8:249032/149‑1                                                                                                                                                                                                                                                                                                              AATAACCGTCGAGCAACTGGCCAGCTGGCTGCAGGAAGACGGCACAGTAGTGCTGGACTTCACCGCCAGTGCCAATTACGTCAAGCGCCATATCCCGGGCGCGTACTGGGCGATCCGTACCCAGCTGGCCGACGCCCT‑GGAACGGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3649172‑3649022 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCATTC  >  NC_002947/3649066‑3649213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.