New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3649022 =	48 (0.820)	4 (0.070)	4/248	NT	8.3%	intergenic (+499/+1192)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
	?	NC_002947	3649066 =	42 (0.740)					intergenic (+543/+1148)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase

TGCGAGCACGTAAACCGGCGTGCGGGTCAGCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCATTC  >  NC_002947/3648920‑3649213                                                                                                                                                    |                                                                                                                                                    accgtcgagcaactggccagctggctgcaggaagacggcacagtagtgctggacttcaccgccagtgccaattacgtcaagcgccatatcccgggcgcgtactGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCa                                                                                                                                                     >  5:337183‑M1/104‑148 (MQ=255)    gtcgagcaactggccagctggctgcaggaagacggcacagtagtgctggacttcaccgccagtgccaattacgtcaagcgccatatcccgggcgcgtactGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTAc                                                                                                                                                 >  5:38717‑M1/101‑149 (MQ=255)          gTAAACCGGCGTGCGGGTCAGCGTCTGCAGGTCGCGCGCGGCGAAACGCGCGAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCg                                                                                                                                          <  3:45554/149‑1 (MQ=255)          gTAAACCGGCGTGCGGGTCAGCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCg                                                                                                                                          >  4:198934/1‑149 (MQ=255)                cGGCGTGCGGGTCAGCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTGTTCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGata                                                                                                                                     >  1:105866/1‑149 (MQ=255)                  gCGTGCGGGTCAGCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATgg                                                                                                                                  <  8:7716/149‑1 (MQ=255)                  gCGTGCGGGTCAGCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATgg                                                                                                                                  <  7:147703/149‑1 (MQ=255)                         ggTCAGCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGa                                                                                                                           <  1:211807/149‑1 (MQ=255)                              gCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTaa                                                                                                                      <  2:304325/149‑1 (MQ=255)                              gCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCACCTGGGTACGGATCGCCCAGTACGCGCCCGCGATATGGCGCTAGACGTaa                                                                                                                      >  7:259577/1‑149 (MQ=255)                                 tCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTg                                                                                                                   <  3:198934/149‑1 (MQ=255)                                 tCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTg                                                                                                                   >  2:358451/1‑149 (MQ=255)                                           gcgcgcgGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCgg                                                                                                         >  3:30897/1‑149 (MQ=255)                                            cgcgcgGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGt                                                                                                        <  1:358451/149‑1 (MQ=255)                                             gcgcgGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGt                                                                                                        >  7:182953/1‑148 (MQ=255)                                               gcggcgAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTg                                                                                                       >  6:268878/1‑147 (MQ=255)                                                    gAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCa                                                                                                <  8:3957/149‑1 (MQ=255)                                                    gAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCa                                                                                                <  5:268878/149‑1 (MQ=255)                                                      aaCGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCtt                                                                                                                             <  6:186637/118‑1 (MQ=255)                                                      aaCGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCtt                                                                                                                             >  5:186637/1‑118 (MQ=255)                                                         gcgcCAGCAGGCTGCTG‑CCAAAGGTCAACACATAACGGCGGGCCTCGGGCCGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCac                                                                                            >  1:21963/1‑148 (MQ=255)                                                          cgcCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCacta                                                                                          <  2:105866/149‑1 (MQ=255)                                                           gcCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCa                                                                                             >  8:87117/1‑145 (MQ=255)                                                           gcCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCa                                                                                             <  7:87117/145‑1 (MQ=255)                                                                             acaGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTg                                                                          >  6:107296/1‑147 (MQ=255)                                                                             acaGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGca                                                                        >  7:249032/1‑149 (MQ=255)                                                                              caGGTCAACACATAACGGCGGGCCTAGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGcag                                                                       >  8:354856/1‑149 (MQ=255)                                                                                    aaCACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCt                                                                 >  5:2943/1‑149 (MQ=255)                                                                                    aaCACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCt                                                                 >  6:330185/1‑149 (MQ=255)                                                                                     acacATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTg                                                                <  7:354856/149‑1 (MQ=255)                                                                                       acaTAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGc                                                              >  4:318870/1‑149 (MQ=255)                                                                                          tAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAg                                                           >  4:217343/1‑149 (MQ=255)                                                                                            aCGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGtt                                                         <  8:182953/149‑1 (MQ=255)                                                                                              ggcggGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGc                                                       <  2:21963/149‑1 (MQ=255)                                                                                               gcggGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCt                                                      >  7:15036/1‑149 (MQ=255)                                                                                                   gtactgggcgatccgtacccagctggccgacgccctggaacggccgcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGAc                                                  >  5:38717‑M2/50‑149 (MQ=255)                                                                                                       tgggcgatccgtacccagctggccgacgccctggaacggccgcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGt                                               >  5:337183‑M2/46‑148 (MQ=255)                                                                                                        ggcgatccgtacccagctggccgacgccctgggaacggccgcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTa                                             >  1:38831‑M2/45‑149 (MQ=255)                                                                                                         GGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTAt                                            >  3:217343‑M1/1‑149 (MQ=255)                                                                                                          GCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTAAGGATAGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTAtt                                           >  8:259577‑M1/1‑149 (MQ=255)                                                                                                                gTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTg                                     <  4:30897/149‑1 (MQ=255)                                                                                                                gTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTg                                     <  8:15036/149‑1 (MQ=255)                                                                                                                cgtacccagctggccgacgccctggaacggccgcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTg                                     <  6:337183‑M2/113‑1 (MQ=255)                                                                                                                      gggCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACg                                                 >  6:383/1‑131 (MQ=255)                                                                                                                      gggCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACg                                                 <  5:383/131‑1 (MQ=255)                                                                                                                           tCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCac                                                                                            >  2:119881/1‑83 (MQ=255)                                                                                                                               ccAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCg                      <  2:285495/149‑1 (MQ=255)                                                                                                                                 aGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCggg                    <  5:88779/149‑1 (MQ=255)                                                                                                                                  gCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGc                   <  6:2943/149‑1 (MQ=255)                                                                                                                                        tACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAgcggc             >  5:368747/1‑149 (MQ=255)                                                                                                                                                gcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCa     >  3:2018‑M2/5‑149 (MQ=255)                                                                                                                                                gcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCa     <  6:368747‑M2/145‑1 (MQ=255)                                                                                                                                                gcccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGACCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGcc      <  5:107296‑M2/144‑1 (MQ=255)                                                                                                                                                 cccAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCAt    >  2:334203‑M2/4‑149 (MQ=255)                                                                                                                                                   cAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCATCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCATTc  <  8:249032‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGCGAGCACGTAAACCGGCGTGCGGGTCAGCGTCTGCAGGTCGCGCGCGGCGAAACGCGCCAGCAGGCTGCTG‑CCACAGGTCAACACATAACGGCGGGCCTCGGGCGGCCGTTCCAGGGCGTCGGCCAGCTGGGTACGGATCGCCCAGTACGCGCCCGGGATATGGCGCTTGACGTAATTGGCACTGGCGGTGAAGTCCAGCACTACTGTGCCGTCTTCCTGCAGCCAGCTGGCCAGTTGCTCGACGGTTATTTCGCTGGCATCCGGCAATTCGGGCAGCGGCGGTTGCCATTC  >  NC_002947/3648920‑3649213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.