New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3861236 =	56 (0.950)	3 (0.050)	3/246	NT	5.5%	coding (159/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3861283 =	49 (0.870)					coding (206/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator

ATTTCGAACGGGGGGTAATCGGGGCGCGCACTGCCCATTACCAGGCGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3861286‑3861236 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcgAAATCAACGTCAGCCAGCATGACTATGAGGGACTGAGCGCAGACTACGCCGGCATCATCGGCGAACAGCTGGACATCCCCATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGAC  >  NC_002947/3861283‑3861428                                                                                                                                                                                                       ATTTCGAACGGGGGGTAATCGGGGCGCGCACTGCCCATTACCAGGCGTTCGAAATCAACGTCAGCCAGCATGACTATGAGGGACTGAGCGCAGACTACGCCGGCATCATCGGCGAACAGCTGGACATCCCCATTGAAGTACGTCGTTTT                                                  >  4:170307/1‑149     CGAACGGGGGGTAATCGGGGCGCGCACTGCCCATTACCAGGCGTTCGAAATCAACGTCAGCCAGCATGACTATGAGGGACTGAGCGCAGACTACGCCGGCATCATCGGCGAACAGCTGGACATCCCCATTGAAGTACGTCGTTTTG                                                 >  5:167867/1‑146     CGAACGGGGGGTAATCGGGGCGCGCACTGCCCATTACCAGGCGTTCGAAATCAACGTCAGCCAGCATGACTATGAGGGACTGAGCGCAGACTACGCCGGCATCATCGGCGAACAGCTGGACATCCCCATTGAAGTACGTCGTTTTG                                                 <  6:167867/146‑1                                              CGTTCGAAATCAACGTCAGCCAGCATGACTATGAGGGACTGAGCGCAGACTACGCCGGCATCATCGGCGAACAGCTGGACATCCCCATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATC     >  1:61214/1‑149                                               GTTCGAAATCAACGTCAGCCAGCATGACTATGAGGGACTGAGCGCAGACTACGCCGGCATCATCGGCGAACAGCTGGACATCCCCATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATC     >  7:80028/1‑148                                                  CGAAATCAACGTCAGCCAGCATGACTATGAGGGACTGAGCGCAGACTACGCCGGCATCATCGGCGAACAGCTGGACATCCCCATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGAC  <  6:290373/148‑1                                                                                                                                                                                                       ATTTCGAACGGGGGGTAATCGGGGCGCGCACTGCCCATTACCAGGCGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3861286‑3861236 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcgAAATCAACGTCAGCCAGCATGACTATGAGGGACTGAGCGCAGACTACGCCGGCATCATCGGCGAACAGCTGGACATCCCCATTGAAGTACGTCGTTTTGACAGCCGTCACGAGGCCATCACTGCCCTGCGTGATGGCCGTATCGAC  >  NC_002947/3861283‑3861428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.