| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3878284 | 66 (1.120) | 5 (0.090) | 3/248 | NT | 7.0% | coding (119/3180 nt) | mexF | multidrug RND transporter MexF |
| ? | NC_002947 | = 3878313 | 70 (1.240) | coding (148/3180 nt) | mexF | multidrug RND transporter MexF | |||||
CCCAGGCGCCACGCGGTTAAGGGACCCTACCGATGAACTTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3878134‑3878284‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAACCCGCGATCAGCAGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGTTCA < NC_002947/3878313‑3878167 CCCAGGCGCCACGCGGTTAAGGGACCCTACCGATGAACTTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAA < 5:294539/149‑1 CCAGGCGCCACGCGGTTAAGGGACCCTACCGATGAACTTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAG < 7:107901/149‑1 CAGGCGCCACGCGGTTAAGGGACCCTACCGATGAACTTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGT > 1:345831/1‑149 CACGCGGTTAAGGGACCCTACCGATGAACTTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAG‑TGGCGCG > 1:321309/1‑148 CTTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAG‑TGGCGCGCACCACCACGGTGGGCGGCACCACTTCGG < 2:321309/149‑1 CTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGG < 4:65602/147‑1 ACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGG < 3:98174/132‑1 ACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGG > 4:98174/1‑132 GAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAACCCGCGATCAGCAGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGT < 3:198880/149‑1 GAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAACCCGCGATCAGCAGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGT < 6:155223/149‑1 GTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAACCCGCGATCAGCAGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGTTCA > 8:111229/1‑149 CCCAGGCGCCACGCGGTTAAGGGACCCTACCGATGAACTTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3878134‑3878284‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAACCCGCGATCAGCAGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGTTCA < NC_002947/3878313‑3878167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |