New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3975820 =	60 (1.020)	4 (0.070)	4/246	NT	6.9%	intergenic (‑44/+34)	PP_3505/PP_3506	hypothetical protein/magnesium chelatase subunit ChII
	?	NC_002947	3975854 =	50 (0.890)					coding (1014/1014 nt)	PP_3506	magnesium chelatase subunit ChII

CAGCCTGGCGCCGGCAACCCGGGTGAGCGGGGCGGGCAGGGCGACTGGGGGGCATTACCGGCACAGCCGGTAGCCAGCGGCGCCCGCCGCGAGGTGCCGAACTGGGCAAAAAAGCCCTGAGCATCCCCCAGCCACCAGCCAAAGGGGCGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3975973‑3975820 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatgcTCAGGGCTTTTTTGCCCAGTTCGGCACCTCGCGGCGGGCGCCGCTGGCTACCGGCTGTGCCGGTAATGCCCCCCAGTCGCCCTGCCCGCCCCGCTCACCCGGGTTGCCGGCGCCAGGCTGCTGGTCAGGCGGCTGT  >  NC_002947/3975854‑3975989                                                                                                                                                                                                                                                                                                    CAGCCTGGCGCCGGCAACCCGGGTGAGCGGGGCGGGCAGGGCGACTGGGGGGCATTACCGGCACAGCCGGTAGCCAGCGGCGCCCGCCGCGAGGTGCCGAACTGGGCAAAAAAGCCCTGAGCATCCCCCAGCCACCAGCCAAAGGGGCG                                                                                                                                               <  3:264829/149‑1   GCCTGGCGCCGGCAACCCGGGTGAGCGGGGCGGGCAGTGCGACTGGTGGGCATTACCGGCACAGCCGGTAGCCAGCGGCGCCCGCCGCGAGGTGCCGAACTGGGCAAAAAAGCCCTGAGCATCCCCCAGCCACCAGCCAAAGGGGCGGA                                                                                                                                             <  5:377049/149‑1                                                                                                                    CCTGAGCATCCCCCAGCCACCAGCCAAAGGGGCGGATGCTCAGGGCTTTTTTGCCCAGTTCGGCACCTCGCGGCGGGCGCCGCTGGCTACCGGCTGTGCCGGTAATGCCCCCCAGTCGCCCTGCCCGCCCCGCTCACCCGGGTTGCCGG                            >  8:304674/1‑149                                                                                                                      TGAGCATCCCCCAGCCACCAGCCAAAGGGGCGGATGCTCAGGGCTTTTTTGCCCAGTTCGGCACCTCGCGGCGGGCGCCGCTGGCTACCGGCTGTGCCGGTAATGCCCCCCAGTCGCCCTGCCCGCCCCGCTCACCCGGGTTGCC                              <  7:251707/145‑1                                                                                                                      TGAGCATCCCCCAGCCACCAGCCAAAGGGGCGGATGCTCAGGGCTTTTTTGCCCAGTTCGGCACCTCGCGGCGGGCGCCGCTGGCTACCGGCTGTGCCGGTAATGCCCCCCAGTCGCCCTGCCCGCCCCGCTCACCCGGGTTGCC                              >  8:251707/1‑145                                                                                                                                              AAGGGGCGGATGCTCAGGGCTTTTTTGCCCAGTTCGGCACCTCGCGGCGGGCGCCGCTGGCTACCGGCTGTGCCGGTAATGCCCCCCAGTCGCCCTGCCCGCCCCGCTCACCCGGGTTGCCGGCGCCAGGCTGCTGGTCAGGCGGCTGT  <  7:304674/149‑1                                                                                                                                                                                                                                                                                                    CAGCCTGGCGCCGGCAACCCGGGTGAGCGGGGCGGGCAGGGCGACTGGGGGGCATTACCGGCACAGCCGGTAGCCAGCGGCGCCCGCCGCGAGGTGCCGAACTGGGCAAAAAAGCCCTGAGCATCCCCCAGCCACCAGCCAAAGGGGCGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3975973‑3975820 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatgcTCAGGGCTTTTTTGCCCAGTTCGGCACCTCGCGGCGGGCGCCGCTGGCTACCGGCTGTGCCGGTAATGCCCCCCAGTCGCCCTGCCCGCCCCGCTCACCCGGGTTGCCGGCGCCAGGCTGCTGGTCAGGCGGCTGT  >  NC_002947/3975854‑3975989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.