New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4388547	46 (0.780)	3 (0.060)	3/238	NT	7.2%	coding (246/1263 nt)	PP_3864	FluMu DNA circulation protein
	?	NC_002947	= 4388623	35 (0.640)					coding (170/1263 nt)	PP_3864	FluMu DNA circulation protein

GCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4388393‑4388547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaagttcgACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGCGTGACCGCTTGCTGGTTGCGCTGGACACGCCGGGGCCTGGCGAACTTGTACACCCGTGGTTCGGGCGCCTGACCGTCACGGCGGGGGATTGCGAAATCTCCCATTCCC  <  NC_002947/4388623‑4388480                                                                                                                                                                                                                                                                                                             GCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTAC                                                                                                                                                         <  7:210008/148‑1  CCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAA                                                                                                                                                       <  2:94223/149‑1       GGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTC                                                                                                                                                   <  1:79837/148‑1       GGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTC                                                                                                                                                   >  2:79837/1‑148                                     GCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCG                                                                                                                                                  >  1:197724/1‑119                                     GCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCG                                                                                                                                                  <  2:197724/119‑1                                           CGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGC                                                                                                              >  1:275114/1‑149                                                                                        GGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGCGTGACCGCTTGCTGGTTGCGCTGGACACGCCGGGGCCTGGCGAAC                                                                 <  2:275114/149‑1                                                                                            ATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGCGTGACCGCTTGCTGGTTGCGCTGGACACGCCGGGGCCTGGCGAACTTGT                                                             <  4:299062/149‑1                                                                                                                                                   ACAAGTTCGACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGCGTGACCGCTTGCTGGTTGCGCTGGACACGCCGGGGCCTGGCGAACTTGTACACCCGTGGTTCGGGCGCCTGACCGTCACGGCGGGGGATTGCGAAATCTCCCAT      >  2:335068/1‑149                                                                                                                                                   ACAAGTTCGACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGCGTGACCGCTTGCTGGTTGCGCTGGACACGCCGGGGCCTGGCGAACTTGTACACCCGTGGTTCGGGCGC                                          <  3:194882/113‑1                                                                                                                                                   ACAAGTTCGACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGCGTGACCGCTTGCTGGTTGCGCTGGACACGCCGGGGCCTGGCGAACTTGTACACCCGTGGTTCGGGCGC                                          >  4:194882/1‑113                                                                                                                                                       GTTCGACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGCGTGACCGCTTGCTGGTTGCGCTGGACACGCCGGGGCCTGGCGAACTTGTACACCCGTGGTTCGGGCGCCTGACCGTCACGGCGGGGGATTGCGAAATCTACCATTCCC  >  6:197683/1‑149                                                                                                                                                                                                                                                                                                             GCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4388393‑4388547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaagttcgACGGCTTTATCATCGGCCCGGACTTCATCAGCCAGCGTGACCGCTTGCTGGTTGCGCTGGACACGCCGGGGCCTGGCGAACTTGTACACCCGTGGTTCGGGCGCCTGACCGTCACGGCGGGGGATTGCGAAATCTCCCATTCCC  <  NC_002947/4388623‑4388480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.