New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4388547	46 (0.780)	3 (0.060)	3/238	NT	7.2%	coding (246/1263 nt)	PP_3864	FluMu DNA circulation protein
	?	NC_002947	= 4388623	35 (0.640)					coding (170/1263 nt)	PP_3864	FluMu DNA circulation protein

GAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCACGCTGTCGCTGTCAACCCAGAACGGCACGCCGCGAAACGACGCCTCGCGTCG  >  NC_002947/4388475‑4388771                                                                                                                                                     |                                                                                                                                                     gAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGt                                                                                                                                                      >  6:346895/1‑149 (MQ=255)      gggAATGGTAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTcgaac                                                                                                                                                 >  6:197683‑M2/1‑144 (MQ=255)          aTGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTcgaacttgt                                                                                                                                             >  2:335068‑M2/1‑140 (MQ=255)            gggAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTAt                                                                                                                                           >  8:165084/1‑149 (MQ=255)                gaTTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCAc                                                                                                                                       >  7:199999/1‑149 (MQ=255)                     cGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGt                                                                                                                                   <  3:263896/148‑1 (MQ=255)                      gCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTc                                                                                                                                  <  8:199999/148‑1 (MQ=255)                      gCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCt                                                                                                                                 >  2:189509/1‑149 (MQ=255)                          tCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCg                                                                                                                             <  7:165084/149‑1 (MQ=255)                             ccaggcgTGACGGTCAGGCGCCAGAACCACGGGTGTACAAGTTCGCGAGGCCCCGGCGTGTCCAGCGCAACCTGCAAGCGGTCACGCTGGCTGATGAAGGCCGGGCCGATGATAAAGGCGTGGAAGTTGTTTTCTCGGGTCTGCCGGcc                                                                                                                          <  4:2153/144‑1 (MQ=255)                                      aCGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGccc                                                                                                                         <  5:314612/141‑1 (MQ=255)                                      aCGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGccc                                                                                                                         >  6:314612/1‑141 (MQ=255)                                              gcgcCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTcgaacttgt                                                                                                                                             <  3:194882‑M2/113‑10 (MQ=255)                                              gcgcCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTcgaacttgt                                                                                                                                             >  4:194882‑M2/1‑104 (MQ=255)                                                   cGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTg                                                                                                     <  7:41634/148‑1 (MQ=255)                                                   cGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTg                                                                                                     >  8:41634/1‑148 (MQ=255)                                                            ggTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTg                                                                                           <  1:189509/149‑1 (MQ=255)                                                              tgtACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTggg                                                                                         <  2:124112/149‑1 (MQ=255)                                                                tACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTgggg                                                                                        >  8:47896/1‑148 (MQ=255)                                                                 aCAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTcgaacttgtacacccgtggttcgggcgcctgaccgtcacggcgggggattgcgaaatctcccat                                                                                      <  4:299062‑M2/149‑65 (MQ=255)                                                                    aGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTc                                                                                   <  8:103924/149‑1 (MQ=255)                                                                    aGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTc                                                                                   <  5:346895/149‑1 (MQ=255)                                                                     gTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTcgaacttgtacacccgtggttcgggcgcctgaccgtcacggcgggggattgcgaaatctcccattccc                                                                                  <  2:275114‑M2/149‑69 (MQ=255)                                                                      ttCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGt                                                                                 <  1:310907/149‑1 (MQ=255)                                                                         gCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTggg                                                                                         >  5:46703/1‑138 (MQ=255)                                                                         gCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTggg                                                                                         <  6:46703/138‑1 (MQ=255)                                                                           cAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCTCCAACGGCTGGTCACGCt                                                                                             <  4:306967/132‑1 (MQ=255)                                                                           cAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCTCCAACGGCTGGTCACGCt                                                                                             >  3:306967/1‑132 (MQ=255)                                                                                         tCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTgg                                                                         >  1:165378/1‑138 (MQ=255)                                                                                         tCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTgg                                                                         <  2:165378/138‑1 (MQ=255)                                                                                            aGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGAc                                                           >  4:238006/1‑149 (MQ=255)                                                                                                   ccAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGt                                                                                                   >  7:178857/1‑102 (MQ=255)                                                                                                   ccAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGt                                                                                                   <  8:178857/102‑1 (MQ=255)                                                                                                   ccAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCAcg                                                    >  5:152855/1‑149 (MQ=255)                                                                                                    cAGCAAGCGGTCACGCTGGCTTATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCAcgc                                                   <  3:30979/149‑1 (MQ=255)                                                                                                        aaGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTg                                                                                           >  7:12436/1‑105 (MQ=255)                                                                                                        aaGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTg                                                                                           <  8:12436/105‑1 (MQ=255)                                                                                                          gCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCAcgctgtcgc                                             >  5:337512/1‑149 (MQ=255)                                                                                                                  gctggctgATGAAGTCCGGGCCGATGATAAAGCCGTcgaacttgtacacccgtggttcgggcgcctgaccgtcacggcgggggattgcgaaatctcccattcccgtttcgagctgggcatggtgcgcttcaacctggcgttcatcgacg                                     >  1:275114‑M2/1‑36 (MQ=255)                                                                                                                   ctggctgATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCACGCTGTCGCTGTCAAccc                                    <  7:47896/149‑1 (MQ=255)                                                                                                                          atgaAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCACGCTGTCGCTGTCAACCCAGAACg                              <  6:337512/148‑1 (MQ=255)                                                                                                                           tgaAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCACGCTGTCGCTGTCAACCCAGAACgg                             >  1:187515/1‑148 (MQ=255)                                                                                                                           tgaAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCACGCTGTCGCTGTCAACCCAGAACgg                             >  4:87616/1‑148 (MQ=255)                                                                                                                                               aaGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCACGCTGTCGCTGTCAACCCAGAACGGCACGCCGCGAAACGACGCCTc        >  4:292370/1‑149 (MQ=255)                                                                                                                                                aGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCAAGTCCTCCACCAACGGCTGGTCACGCTAGGGGTATTCGTTCAGCTGGGTGCGCCGGACGACCCGCACCCAGTCGCTGTCAACCCAGAACGGCACGCCGCGAAACGACGCCtag       >  8:14912/1‑147 (MQ=255)                                                                                                                                                     tCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCACGCTGTCGCTGTCAACCCAGAACGGCACGCCGCGAAACGACGCCTCGCGTCg  >  1:329277/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCAGCAAGCGGTCACGCTGGCTGATGAAGTCCGGGCCGATGATAAAGCCGTCGAACTTGTATTCACGGGTCTGCCGGCCCATGTCCTCCACCAACGGCTGGTCACGCTTGGGGTATTCGTGCAGCTGGGTGCGCCGGCCGACCGGCACGCTGTCGCTGTCAACCCAGAACGGCACGCCGCGAAACGACGCCTCGCGTCG  >  NC_002947/4388475‑4388771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.