New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4536700 =	NA (NA)	5 (0.090)	4/248	NT	7.9%	coding (35/1533 nt)	PP_4025	transposase
	?	NC_002947	= 4627423	61 (1.040)					coding (81/1533 nt)	PP_4091	transposase

GGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACCTTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGggtcg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4536847‑4536700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTCGACAAAGGTCAGATCGTCGATCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGA  <  NC_002947/4627423‑4627271                                                                                                                                                                                                                                                                                                               GGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACCTTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGG                                                                                                                                                          <  3:85205/149‑1  GCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACCTTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGGG                                                                                                                                                         >  3:144940/1‑149       TTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACCTTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGG                                                                                                                                                          <  5:210678/143‑1       TTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACCTTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGG                                                                                                                                                          >  6:210678/1‑143                    TTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACCTTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGGG                                                                                                                                                         >  1:317143/1‑131                    TTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACCTTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGGG                                                                                                                                                         <  2:317143/131‑1                            GACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACC‑TTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGGGTC                                                                                                                                                       <  7:314192/124‑1                            GACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACC‑TTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGGGTC                                                                                                                                                       >  8:314192/1‑124                                                                                            ctcTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGGGTCGACAAAGGTCAGATCGTCGACCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGT                                                               >  3:282550/4‑149                                                                                             TTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGGGTCGACAAAGGTCAGATCGTCGACCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTC                                                              >  3:182837/1‑149                                                                                                 TCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGGGTCGACAAAGGTCAGATCGTCGATCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAA                                                           >  5:53621/1‑148                                                                                                    ACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGC‑‑‑GCACGGTCGACAAAGGTCAGATCGTCGACCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCC                                                    >  8:230544/1‑149                                                                                                       GTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGC‑‑‑GCACGGTCGACAAAGGTCAGATCGTCGATCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAA                                                 >  7:36004/1‑149                                                                                                                                                         GACAAAGGTCAGATCGTCGATCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGA  <  3:98426/149‑1                                                                                                                                                                                                                                                                                                               GGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACCTGTTCTTTAAGGTCGACGATCTGACCTTTGTCGACCGTGCGCTCGGCCAACAACTGCGCAAGCAGTAGTTTGAGCGCGGCAGggtcg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4536847‑4536700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTCGACAAAGGTCAGATCGTCGATCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGA  <  NC_002947/4627423‑4627271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.