New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4652318 =	77 (1.310)	4 (0.070)	3/246	NT	5.7%	coding (90/804 nt)	PP_4115	hypothetical protein
	?	NC_002947	4652370 =	60 (1.070)					coding (142/804 nt)	PP_4115	hypothetical protein

GAAGGCCTGCAGGGCGGGCAGCAGTTCGGCGCTGCTGCGATGCTGAAGTGGCACCACCTCGGTGGCGGCATGGGCGGTGAGGCTGGCGACCAGCAACAGGGAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4652423‑4652318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggtgGTGCCACTTCAGCATCGCAGCAGCGCCGAACTGCTGCCCGCCCTGCAGGCCTTCATCGGCAAGGACGGCACGGTCAGCGCCTTCGAGAACAAACTGATCGTCAACGCCAGCCCCGAGCGCATCGACGACCTGCGCGCCCTGCTGC  >  NC_002947/4652370‑4652514                                                                                                                                                                                                                                                             GAAGGCCTGCAGGGCGGGCAGCAGTTCGGCGCTGCTGCGATGCTGAAGTGGCACCACCTCGGTGGCGGCATGGGCGGTGAGGCTGGCGACCAGCAACAGGG                                                                                                                                                        <  6:163974/101‑1                                                   gtACCACCTCGGTGGCGGCATGGGCGGTGAGGCTGGCGACCAGCAACAGGGAGGTGGTGCCACTTCAGCATCGCAGCAGCGCCGAACTGCTGCCCGCCCTGCAGGCCTTCATCG                                                                                         <  5:56618/112‑1                                                   gtACCACCTCGGTGGCGGCATGGGCGGTGAGGCTGGCGACCAGCAACAGGGAGGTGGTGCCACTTCAGCATCGCAGCAGCGCCGAACTGCTGCCCGCCCTGCAGGCCTTCATCG                                                                                         >  6:56618/3‑114                                                     ACCACCTCGGTGGCGGCATGGGCGGTGAGGCTGGCGACCAGCAACAGGGAGGTGGTGCCACTTCAGCATCGCAGCAGCGCCGAACTGCTGCCCGCCCTGCAGGCCTTCATCGGCAAGGACGGCACGGTCAGCGCCTTCGAGAACAAACT                                                    >  8:91357/1‑149                                                         CCTCGGTGGCGGCATGGGCGGTGAGGCTGGCGACCAGCAACAGGGAGGTGGTGCCACTTCAGCATCGCAGCAGCGCCGAACTGCTGCCCGCCCTGCAGGCCTTCATCGGCAAGGACGGCACGGTCAGCGCCTTCGAGAACAAACTGATC                                                <  7:91357/149‑1                                                                                                       GGTGGTGCCACTTCAGCATCGCAGCAGCGCCGAACTGCTGCCCGCCCTGCAGGCCTTCATCGGCAAGGACGGCACGGTCAGCGCCTTCGAGAACAAACTGATCGTCAACGCCAGCCCCGAGCGCATCGACGACCTGCGCGCCCTGCTGC  <  7:179929/149‑1                                                                                                                                                                                                                                                             GAAGGCCTGCAGGGCGGGCAGCAGTTCGGCGCTGCTGCGATGCTGAAGTGGCACCACCTCGGTGGCGGCATGGGCGGTGAGGCTGGCGACCAGCAACAGGGAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4652423‑4652318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggtgGTGCCACTTCAGCATCGCAGCAGCGCCGAACTGCTGCCCGCCCTGCAGGCCTTCATCGGCAAGGACGGCACGGTCAGCGCCTTCGAGAACAAACTGATCGTCAACGCCAGCCCCGAGCGCATCGACGACCTGCGCGCCCTGCTGC  >  NC_002947/4652370‑4652514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.