New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5182288	63 (1.070)	5 (0.090)	5/240	NT	7.3%	intergenic (‑13/‑223)	csbD/PP_4562	stress response protein/hypothetical protein
	?	NC_002947	= 5182340	69 (1.260)					intergenic (‑65/‑171)	csbD/PP_4562	stress response protein/hypothetical protein

CTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5182135‑5182288 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaactcctgGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAGGAGTTTTGCCATGAGCGGTACTAAAGACAAAGCGAAAGGCTTGGCCAACGAAGCGATCGGCAACGTGAAACAGGGTGTTGGCAAGGTGACCGA  <  NC_002947/5182340‑5182193                                                                                                                                                                                                                                                                                                                CTGCTGCGCCTCGCCTTTGAGCTCCTGAGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAA                                                                                                                                                            >  6:218340/1‑148  TGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACT                                                                                                                                                          >  4:111206/1‑149    CTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCATAACTC                                                                                                                                                         <  5:218340/148‑1    CTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCC                                                                                                                                                        >  2:188899/1‑149    CTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTC                                                                                                                                                         <  7:301340/148‑1       CGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCTG                                                                                                                                                      >  7:42846/1‑148       CGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCT                                                                                                                                                       <  4:369280/147‑1       CGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCT                                                                                                                                                       <  6:19451/147‑1       CGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCT                                                                                                                                                       <  1:286497/147‑1                                           CCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTATGTCTTTAGTACCGCTCATGGCAAAACTCCTGGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTT                                                                                                                  >  5:279241/1‑148                                                                      GCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTATGTCTTTAGTACCGCTCATGGCAAAACTCCTGGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAGGAGTTTTG                                                                                       <  6:279241/148‑1                                                                        CAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCTGGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAGGAGTTTTGCC                                                                                     <  7:128497/148‑1                                                                         AACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCTGGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAG                                                                                               >  4:286299/1‑137                                                                         AACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCTGGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAG                                                                                               <  3:286299/137‑1                                                                                                                                                    ACTCCTGGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAGGAGTTTTGCCATGAGCGGTACTAAAGACAAAGCGAAAGGCTTGGCCAACGAAGCGATCGGCAACGTGAAACAGG                     >  7:149222/1‑136                                                                                                                                                    ACTCCTGGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAGGAGTTTTGCCATGAGCGGTACTAAAGACAAAGCGAAAGGCTTGGCCAACGAAGCGATCGGCAACGTGAAACAGG                     <  8:149222/136‑1                                                                                                                                                        CTGGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAGGAGTTTTGCCATGAGCGGTACTAAAGACAAAGCGAAAGGCTTGGCCAACGAAGCGATCGGCAACGTGAAACAGGGTGTTGGCAAGGTGACC    >  6:25544/1‑149                                                                                                                                                          GGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAGGAGTTTTGCCATGAGCGGTACTAAAGACAAAGCGAAAGGCTTGGCCAACGAAGCGATCGGCAACGTGAAACAGGGTGTTGGCAAGGTGACCGA  >  6:250466/1‑149                                                                                                                                                                                                                                                                                                                CTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGCCAACACCCTGTTTCACGTTGCCGATCGCTTCGTTGGCCAAGCCTTTCGCTTTGTCTTTAGTACCGCTCATGGCAAAACTCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5182135‑5182288 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaactcctgGCCCAGGCGTTGGGTCAACCTTCTGTCGACACGGTTCACGTGTCTCCATTTGCAGGAGTTTTGCCATGAGCGGTACTAAAGACAAAGCGAAAGGCTTGGCCAACGAAGCGATCGGCAACGTGAAACAGGGTGTTGGCAAGGTGACCGA  <  NC_002947/5182340‑5182193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.