New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5441488 =	40 (0.680)	3 (0.050)	3/242	NT	7.3%	coding (1096/1653 nt)	PP_4780	acyl‑CoA dehydrogenase
	?	NC_002947	5441541 =	39 (0.710)					coding (1043/1653 nt)	PP_4780	acyl‑CoA dehydrogenase

TGATGCGCCAGGCGTTGACGCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5441643‑5441488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccaggTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCAGCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCTGGCGCATCAGTGCGCTGGAGCCGACCATGCAGTCGAACCGGGTCATGGCGACC  >  NC_002947/5441541‑5441687                                                                                                                                                                                                                                                                                                                 TGATGCGCCAGGCGTTGACGCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATG                                                                                                                                                            >  5:150490/1‑149   ATGCGCCAGGCGTTGACGCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGG                                                                                                                                                          <  2:193694/149‑1   ATGCGCCAGGCGTTGACGCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGG                                                                                                                                                          <  7:167579/149‑1   ATGCGCCAGGCGTTGACGCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGG                                                                                                                                                           <  5:245784/148‑1       GCCAGGCGTTGACGCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAG                                                                                                                                                      >  8:170513/1‑149                    GCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGC                                                                                                                                                         >  7:193212/1‑133                    GCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGC                                                                                                                                                         <  8:193212/133‑1                                                                                               ccgatctGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCAGCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGT                                                               <  5:99845/141‑1                                                                                                      GACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCAGCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCT                                                       >  7:31261/1‑149                                                                                                       ACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCAGCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGT                                                               >  6:99845/1‑140                                                                                                                                                       GCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCAGCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCTGGCGCATCAGTGCGCTGGAGCCGACCATGCAGTCGAACCGGGTCATGGC      <  8:167579/149‑1                                                                                                                                                         CAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCAGCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCTGGCGCATCAGTGCGCTGGAGCCGACCATGCAGTCGAACCGGGTCATGGCGA    >  4:152329/1‑149                                                                                                                                                           GGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCAGCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCTGGCGCATCAGTGCGCTGGAGCCGACCATGCAGTCGAACCGGGTCATGGCGACC  <  6:111057/149‑1                                                                                                                                                                                                                                                                                                                 TGATGCGCCAGGCGTTGACGCAGGCGGCCCACCATTGCGCGCATCGCAAGGTCGGCGGGCGGGTGCTGAACGAGCAGCCATTGATGCAGAACGTGCTGGCCGACCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5441643‑5441488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccaggTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCAGCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCTGGCGCATCAGTGCGCTGGAGCCGACCATGCAGTCGAACCGGGTCATGGCGACC  >  NC_002947/5441541‑5441687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.