New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5441488 =	40 (0.680)	3 (0.050)	3/242	NT	7.3%	coding (1096/1653 nt)	PP_4780	acyl‑CoA dehydrogenase
	?	NC_002947	5441541 =	39 (0.710)					coding (1043/1653 nt)	PP_4780	acyl‑CoA dehydrogenase

TGCTGTCTTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCT  >  NC_002947/5441341‑5441634                                                                                                                                                    |                                                                                                                                                    ggtcgccatgacccggttcgactgcatggtcggctccagcgcactgatgcgccaggcgttgacgcaggcggcccaccattgcgcgcatcgcaaggtcggcgggcgggtgctgaacgagcagccattgatgcagaacgtgctggccgacc                                                                                                                                                    <  6:111057‑M1/2‑1 (MQ=255)   tcgccatgacccggttcgactgcatggtcggctccagcgcactgatgcgccaggcgttgacgcaggcggcccaccattgcgcgcatcgcaaggtcggcgggcgggtgctgaacgagcagccattgatgcagaacgtgctggccgaCCTg                                                                                                                                                  >  4:152329‑M1/146‑149 (MQ=255)    tGTCTTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTgg                                                                                                                                                 >  5:118242/1‑149 (MQ=255)     gccatgacccggttcgactgcatggtcggctccagcgcactgatgcgccaggcgttgacgcaggcggcccaccattgcgcgcatcgcaaggtcggcgggcgggtgctgaacgagcagccattgatgcagaacgtgctggccgaCCTGGc                                                                                                                                                <  8:167579‑M1/6‑1 (MQ=255)          ccACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGc                                                                                                                                                <  4:88161/144‑1 (MQ=255)          ccACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGc                                                                                                                                                >  3:88161/1‑144 (MQ=255)          ccACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCAt                                                                                                                                            <  4:168889/148‑1 (MQ=255)                   ccGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTc                                                                                                                                  >  3:69097/1‑149 (MQ=255)                     gcgcCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCACATGCGCAAGCTCAg                                                                                                                                >  6:225125/1‑149 (MQ=255)                      cgcctaccAGGCATTCGGCGGCCGCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAgg                                                                                                                               <  6:259235/143‑1 (MQ=255)                         cACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGc                                                                                                                             >  2:245540/1‑148 (MQ=255)                               ggCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCa                                                                                                                      <  1:245540/149‑1 (MQ=255)                                    tCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCt                                                                                                                  <  4:79758/148‑1 (MQ=255)                                       gcggcCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCt                                                                                                              >  8:20051/1‑149 (MQ=255)                                           ccTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTcc                                                                                                          <  5:225125/149‑1 (MQ=255)                                             tagTTGATCATTGCAGGCACACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCATGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTAAGGGCGAGCGCAGCCTCGCTTTCCAg                                                                                                        <  6:350311/147‑1 (MQ=255)                                               gTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAggg                                                                                                      >  8:100431/1‑149 (MQ=255)                                               gTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAggg                                                                                                      >  6:218501/1‑149 (MQ=255)                                               gTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAg                                                                                                        <  4:69097/147‑1 (MQ=255)                                                   aTCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAg                                                                                                  >  4:369152/1‑149 (MQ=255)                                                   aTCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAg                                                                                                  <  6:118242/149‑1 (MQ=255)                                                      aggcgttgacgcaggcggcccaccattgcgcgcatcgcaaggtcggcgggcgggtgctgaacgagcagccattgatgcagaacgtgctggccgaCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTc                                                                                               >  7:31261‑M1/95‑149 (MQ=255)                                                      aTGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTc                                                                                               >  8:143230/1‑149 (MQ=255)                                                       tGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCg                                                                                              <  5:218501/149‑1 (MQ=255)                                                              acgcaggcggcccaccattgcgcgcatcgcaaggtcggcgggcgggtgctgaacgagcagccattgatgcagaacgtgctggccgaCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGgccaggtcagatcgg                                                                                        <  5:99845‑M1/62‑8 (MQ=255)                                                              acgcaggcggcccaccattgcgcgcatcgcaaggtcggcgggcgggtgctgaacgagcagccattgatgcagaacgtgctggccgaCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGt                                                                                                >  6:99845‑M1/87‑140 (MQ=255)                                                                       gCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGc                                                                               <  3:369152/148‑1 (MQ=255)                                                                        cAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCa                                                                              <  1:148685/148‑1 (MQ=255)                                                                        cAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCAt                                                                             <  5:259933/149‑1 (MQ=255)                                                                            tCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAAt                                                                         <  7:20051/149‑1 (MQ=255)                                                                            tCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAAt                                                                         <  7:100431/149‑1 (MQ=255)                                                                                      gCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGt                                                               >  5:277831/1‑149 (MQ=255)                                                                                        ccACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGtt                                                              >  2:335078/1‑148 (MQ=255)                                                                                                       gCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCccgccg                                             <  7:204189/149‑1 (MQ=255)                                                                                                          gggCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGAcc                                          >  6:188544/1‑149 (MQ=255)                                                                                                           ggCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCt                                         <  6:277831/149‑1 (MQ=255)                                                                                                              aaaaTGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGtt                                                              >  4:298852/1‑126 (MQ=255)                                                                                                              aaaaTGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGtt                                                              <  3:298852/126‑1 (MQ=255)                                                                                                                       cTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATgcgcg                              >  7:170513/1‑148 (MQ=255)                                                                                                                          ttGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAAt                          <  7:143230/149‑1 (MQ=255)                                                                                                                               ggTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAAtggtgg                     <  5:188544/149‑1 (MQ=255)                                                                                                                                        gTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGgccgccagg            >  3:235069/1‑146 (MQ=255)                                                                                                                                        gTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGc            >  6:213426/1‑149 (MQ=255)                                                                                                                                         ttGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCg           >  7:179269/1‑149 (MQ=255)                                                                                                                                            cTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTc         <  2:118669/148‑1 (MQ=255)                                                                                                                                             tCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCaa       >  6:150490/1‑149 (MQ=255)                                                                                                                                              ccAGCGCCTGGCCCATGCGCAATCTCAGGGCGATCGCAGCCTCGCTTTCCAGGGCCATGTCGGCCAGCACGTTCTGCATCAATGGCTGCTGGTTCATTCACCCGCCCGCCGTCCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCaa       <  1:91072/149‑1 (MQ=255)                                                                                                                                               cAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAACCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACg     >  1:252019/1‑149 (MQ=255)                                                                                                                                                  cgcCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCCGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCt  <  5:299788/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGCTGTCTTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCAAGCTCAGGGCGAGCGCAGCCTCGCTTTCCAGGGCCAGGTCGGCCAGCACGTTCTGCATCAATGGCTGCTCGTTCA‑GCACCCGCCCGCCGACCTTGCGATGCGCGCAATGGTGGGCCGCCTGCGTCAACGCCT  >  NC_002947/5441341‑5441634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.