New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5596413	63 (1.070)	3 (0.050)	3/242	NT	5.3%	intergenic (‑79/‑87)	PP_mr58/PP_4923	TPP regulatory region/outer membrane efflux protein
	?	NC_002947	= 5596446	49 (0.890)					intergenic (‑112/‑54)	PP_mr58/PP_4923	TPP regulatory region/outer membrane efflux protein

GGCGCTAACCTGATCAGGTTCAACGGGATCCGCACCTCTGCGATCTCAGCCTTTGCTTCAAGGCACCCCGACAAGAACATGCGCAGTCTAGACTGGAGTGGTCAGCAAAGCCAAGCAGGTAAATGCGCGGATGATGAAAGGCACACCGAGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5596260‑5596413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgatGGGCCAGTGTAGTGCCATGCGCACCCGGCAACAATCGCTCGGTGTGCCTTTCATCATCCGCGCATTTACCTGCTTGGCTTTGCTGACCACTCCAGTCTAGACTGCGCATGTTCTTGTCGGGGTGCCTTGAAGCAAAGGCT  <  NC_002947/5596446‑5596307                                                                                                                                                                                                                                                                                                        GGCGCTAACCTGATCAGGTTCAACGGGATCCGCACCTCTGCGATCTCAGCCTTTGCTTCAAGGCACCCCGACAAGAACATGCGCAGTCTAGACTGGAGTGGTCAGCAAAGCCAAGCAGGTAAATGCGCGGATGATGAAAGGCACACCGA                                                                                                                                                   <  5:379643/149‑1    GCTAACCTGATCAGGTTCAACGGGATCCGCACCTCTGCGATCTCAGCCTTTGCTTCAAGGCACCCCGACAAGAACATGCGCAGTCTAGACTGGAGTGGTCAGCAAAGCCAAGCAGGTAAATGCGCGGATGATGAAAGGCACACCGAGC                                                                                                                                                 >  4:173934/1‑148                                      CTGCGATCTCAGCCTTTGCTTCAAGGCACCCCGACAAGAACATGCGCAGTCTAGACTGGAGTGGTCAGCAAAGCCAAGCAGGTAAATGCGCGGATGATGAAAGGCACACCGAGCGATGGGCCAGTGTAGTGCCATGCGCACCCGGCAA                                                                                                               >  6:298388/1‑148                                                AGCCTTTGCTTCAAGGCACCCCGACAAGAACATGCGCAGTCTAGACTGGAGTGGTCAGCAAAGCCAAGCAGGTAAATGCGCGGATGATGAAAGGCACACCGAGCGATGGGCCAGTGTAGTGCCATGCGCACCCGGCAACAATCGCTCGG                                                                                                    <  8:117475/149‑1                                                 GCCTTTGCTTCAAGGCACCCCGACAAGAACATGCGCAGTCTAGACTGGAGTGGTCAGCAAAGCCAAGCAGGTAAATGCGCGGATGATGAAAGGCACACCGAGCGATGGGCCAGTGTAGTGCCATGCGCACCCGGCAACAATCGCTCGGT                                                                                                   <  5:298388/149‑1                                                                                                                                                    GAGCGATGGGCCAGTGTAGTGCCATGCGCACCCGGCAACAATCGCTCGGTGTGCCTTTCATCATCCGCGCATTTACCTGCTTGGCTTTGCTGACCACTCCAGTCTAGACTGCGCATGTTCTTGTCGGGGTGCCTTGAAGCAAAGGCT  >  5:126464/1‑147                                                                                                                                                     AGCGATGGGCCAGTGTAGTGCCATGCGCACCCGGCAACAATCGCTCGGTGTGCCTTTCATCATCCGCGCATTTACCTGCTTGGCTTTGCTGACCACTCCAGTCTAGACTGCGCATGTTCTTGTCGGGGTGCCTTGAAGCAAAGGCT  >  8:92652/1‑146                                                                                                                                                        GATGGGCCAGTGTAGTGCCATGCGCACCCGGCAACAATCGCTCGGTGTGCCTTTCATCATCCGCGCATTTACCTGCTTGGCTTTGCTGACCACTCCAGTCTAGACTGCGCATGTTCTTGTCGGGGTGCCTTGAAGCAAAGGCT  >  4:50004/1‑143                                                                                                                                                                                                                                                                                                        GGCGCTAACCTGATCAGGTTCAACGGGATCCGCACCTCTGCGATCTCAGCCTTTGCTTCAAGGCACCCCGACAAGAACATGCGCAGTCTAGACTGGAGTGGTCAGCAAAGCCAAGCAGGTAAATGCGCGGATGATGAAAGGCACACCGAGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5596260‑5596413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgatGGGCCAGTGTAGTGCCATGCGCACCCGGCAACAATCGCTCGGTGTGCCTTTCATCATCCGCGCATTTACCTGCTTGGCTTTGCTGACCACTCCAGTCTAGACTGCGCATGTTCTTGTCGGGGTGCCTTGAAGCAAAGGCT  <  NC_002947/5596446‑5596307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.