New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5680908 =	53 (0.900)	4 (0.070)	4/246	NT	7.5%	coding (375/618 nt)	PP_4986	hemolysin III family channel protein
	?	NC_002947	5680926 =	48 (0.860)					coding (357/618 nt)	PP_4986	hemolysin III family channel protein

TGTCGATCTATCTGCTGATTGCCGGCAGCTACACGCCGTTTTGCCTGGTCAGCCTGCGCGGCCCTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCTCCGAGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5681056‑5680908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggCTTGATCTCTTG  >  NC_002947/5680926‑5680937                                                                                                                                                                   TGTCGATCTATCTGCTGATTGCCGGCAGCTACACGCCGTTTTGCCTGGTCAGCCTGCGCGGCCCTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCTCCGAGGCGCG               >  4:315693/1‑148                 GATTGCCGGCAGCTACACGCCGTTTTGCCTGGTCAGCCTGCGCGGCCCTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCTCCGAGGCGC                <  7:128996/131‑1                 GATTGCCGGCAGCTACACGCCGTTTTGCCTGGTCAGCCTGCGCGGCCCTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCTCCGAGGCGC                >  8:128996/1‑131                                                               CCTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCCTCGGAGCGCGGCTTGATCTCTTG  >  1:137241/1‑99                                                               CCTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCCTCGGAGCGCGGCTTGATCTCTTG  <  2:137241/99‑1                                                                CTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCCTCGGAGCGCGGCTTGATC       >  3:199117/1‑93                                                                CTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCCTCGGAGCGCGGCTTGATC       <  4:199117/93‑1                                                                                                                                                                   TGTCGATCTATCTGCTGATTGCCGGCAGCTACACGCCGTTTTGCCTGGTCAGCCTGCGCGGCCCTTGGGGATGGAGCCTGTTCGGCGTGGTCTGGGGGCTGGCGATCATCGGCATGTTGCAAGAGATCAAGCCGCGCTCCGAGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5681056‑5680908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggCTTGATCTCTTG  >  NC_002947/5680926‑5680937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.