New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5680908 =	53 (0.900)	4 (0.070)	4/246	NT	7.5%	coding (375/618 nt)	PP_4986	hemolysin III family channel protein
	?	NC_002947	5680926 =	48 (0.860)					coding (357/618 nt)	PP_4986	hemolysin III family channel protein

TGCCGACGGTGTAGAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCAGATAGATCGACA  >  NC_002947/5680778‑5681056                                                                                                                                                     |                                                                                                                                   tgCCGACGGTGTAGAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGc                                                                                                                                    <  6:195496/149‑1 (MQ=255)  gCCGACGGTGTAGAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCt                                                                                                                                   >  3:37664/1‑149 (MQ=255)   ccGACGGTGTAGAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCtt                                                                                                                                  >  8:92687/1‑149 (MQ=255)          tgtAGAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATctct                                                                                                                           >  2:280261/1‑149 (MQ=255)            tAGAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCtt                                                                                                                          <  5:45606/148‑1 (MQ=255)            tAGAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCtt                                                                                                                          <  7:85824/148‑1 (MQ=255)              gAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGc                                                                                                                        <  1:13641/148‑1 (MQ=255)                acacGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCaa                                                                                                                      >  5:187440/1‑148 (MQ=255)                acacGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCaa                                                                                                                      >  4:17625/1‑148 (MQ=255)                    gccgccGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCCGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGc                                                                                                                 >  2:320392/1‑149 (MQ=255)                    gccgccGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTg                                                                                                                         >  2:240809/1‑141 (MQ=255)                    gccgccGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTg                                                                                                                         <  1:240809/141‑1 (MQ=255)                    gccgccGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGc                                                                                                                 <  8:237864/149‑1 (MQ=255)                    gccgccGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGc                                                                                                                 <  4:217578/149‑1 (MQ=255)                    gccgccGGCAGCCAGCCAGGCGAAGACGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCCCGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGc                                                                                                                 >  7:167932/1‑149 (MQ=255)                       gccgGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCga                                                                                                              <  7:26970/149‑1 (MQ=255)                                   ccagGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGcc                                                                                                  <  4:37664/149‑1 (MQ=255)                                     agGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCaa                                                                                                                      <  7:200221/127‑1 (MQ=255)                                     agGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCaa                                                                                                                      >  8:200221/1‑127 (MQ=255)                                       gCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCa                                                                                              <  6:187440/149‑1 (MQ=255)                                              cggccgTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGTCCACg                                                                                       <  6:299473/149‑1 (MQ=255)                                                      cccAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATCATCGCCAGCCCCCAGACCACGCCGAACa                                                                                <  1:208646/148‑1 (MQ=255)                                                       ccAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAgg                                                                              <  7:92687/149‑1 (MQ=255)                                                       ccAGCGAGTTCAGCAGCGGCTTGACTGCCAACAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACATGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAgg                                                                              <  8:167932/149‑1 (MQ=255)                                                         aGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCGATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCt                                                                            <  5:61848/149‑1 (MQ=255)                                                              gTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATc                                                                       >  6:49947/1‑149 (MQ=255)                                                              ccttggggatggagcctgttcggcgtggtctgggggctggcgatcatcggcatgttgcaagagatcaagccgcgcctcggagcgcggCTTGATCTCTTg                                                                                                                         >  1:137241‑M2/88‑99 (MQ=255)                                                              ccttggggatggagcctgttcggcgtggtctgggggctggcgatcatcggcatgttgcaagagatcaagccgcgcctcggagcgcggCTTGATCTCTTg                                                                                                                         <  2:137241‑M2/12‑1 (MQ=255)                                                               cttggggatggagcctgttcggcgtggtctgggggctggcgatcatcggcatgttgcaagagatcaagccgcgcctcggagcgcggCTTGAtc                                                                                                                              >  3:199117‑M2/87‑93 (MQ=255)                                                               cttggggatggagcctgttcggcgtggtctgggggctggcgatcatcggcatgttgcaagagatcaagccgcgcctcggagcgcggCTTGAtc                                                                                                                              <  4:199117‑M2/7‑1 (MQ=255)                                                                 cagcagCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATccc                                                                     >  4:220932/1‑148 (MQ=255)                                                                     agcGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAgg                                                                <  3:17625/149‑1 (MQ=255)                                                                      gcGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAggg                                                               <  1:280261/149‑1 (MQ=255)                                                                       cGGCTTGACTGCCACCAGGACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGc                                                              <  5:221837/149‑1 (MQ=255)                                                                           ttGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCcgcg                                                          >  6:2978/1‑149 (MQ=255)                                                                                  ccaccaGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCt                                                    <  6:370128/148‑1 (MQ=255)                                                                                      caGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCa                                               <  6:301355/149‑1 (MQ=255)                                                                                          aCGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATACCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGc                                            >  6:349113/1‑148 (MQ=255)                                                                                            gATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCa                                                                                                     >  2:318256/1‑89 (MQ=255)                                                                                            gATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCa                                                                                                     <  1:318256/89‑1 (MQ=255)                                                                                                 aGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGc                                    <  5:49947/149‑1 (MQ=255)                                                                                                 aGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGc                                    >  3:103751/1‑149 (MQ=255)                                                                                                 aGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGc                                    <  2:361886/149‑1 (MQ=255)                                                                                                     cATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCgtg                                 >  1:298549/1‑148 (MQ=255)                                                                                                           cGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCa                                               >  4:123443/1‑128 (MQ=255)                                                                                                           cGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCa                                               <  3:123443/128‑1 (MQ=255)                                                                                                                       caagagatcaagCCGCGCTCCGAGGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAgg                                                                >  1:137241‑M1/13‑99 (MQ=255)                                                                                                                       caagagatcaagCCGCGCTCCGAGGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAgg                                                                <  2:137241‑M1/87‑1 (MQ=255)                                                                                                                         tCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCaga            <  5:2978/149‑1 (MQ=255)                                                                                                                          cGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCaga            >  3:80137/1‑148 (MQ=255)                                                                                                                           gACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCagat           <  1:320392/148‑1 (MQ=255)                                                                                                                           gACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCaga            >  5:249321/1‑147 (MQ=255)                                                                                                                            gatcaagCCGCGCTCCGAGGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAg                                                                 <  4:199117‑M1/86‑1 (MQ=255)                                                                                                                            gatcaagCCGCGCTCCGAGGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAg                                                                 >  3:199117‑M1/8‑93 (MQ=255)                                                                                                                               ggATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCAGATAGATc      <  3:220932/149‑1 (MQ=255)                                                                                                                               ggATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATACCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCAGATAGATc      <  5:349113/149‑1 (MQ=255)                                                                                                                                gATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCAGATAGATc      >  3:315693/1‑148 (MQ=255)                                                                                                                                  tCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCa                     <  6:322383/131‑1 (MQ=255)                                                                                                                                  tCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCa                     >  5:322383/1‑131 (MQ=255)                                                                                                                                    CGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCAGATAGATCGACa  >  4:315693‑M1/1‑148 (MQ=255)                                                                                                                                     GCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATc                  <  7:128996‑M1/131‑1 (MQ=255)                                                                                                                                     GCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATc                  >  8:128996‑M1/1‑131 (MQ=255)                                                                                                                                                     |                                                                                                                                   TGCCGACGGTGTAGAACACGCCGCCGGCAGCCAGCCAGGCGAAGCCGGCCGTGCCCAGCGAGTTCAGCAGCGGCTTGACTGCCACCAGCACGATCCAGCCCATTACCGCATAGATGATGATCGACAGGATCCGCGCCTCGGAGCGCGGCTTGATCTCTTGCAACATGCCGATGATCGCCAGCCCCCAGACCACGCCGAACAGGCTCCATCCCCAAGGGCCGCGCAGGCTGACCAGGCAAAACGGCGTGTAGCTGCCGGCAATCAGCAGATAGATCGACA  >  NC_002947/5680778‑5681056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.