New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 6055813 = | 58 (0.990) | 3 (0.060) | 3/234 | NT | 5.3% | intergenic (+34/‑61) | tonB/oxyR | TonB energy transducing system subunit TonB/oxidative and nitrosative stress transcriptional dual regulator |
? | NC_002947 | 6055876 = | 55 (1.030) | coding (3/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
GTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACGTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6055965‑6055813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcacgttatGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA > NC_002947/6055876‑6056019 GTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACG < 2:193202/149‑1 CATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAAGTCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCC > 1:268053/1‑148 CGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGA < 7:280430/125‑1 CGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGA > 8:280430/1‑125 ACGCAAGTTATGAACCTTACAGAATTACGCTACATCGTCACACTAGCCCAGGAACATCACTTCGGCCATTCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTAGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTG < 1:232482/148‑1 ACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTC < 4:363970/149‑1 ACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTC < 6:277484/149‑1 GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA < 6:178877/149‑1 GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCACTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA < 6:45855/149‑1 GTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACGTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6055965‑6055813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcacgttatGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA > NC_002947/6055876‑6056019 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |