| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6055813 = | 58 (0.990) | 3 (0.060) | 3/234 | NT | 5.3% | intergenic (+34/‑61) | tonB/oxyR | TonB energy transducing system subunit TonB/oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | 6055876 = | 55 (1.030) | coding (3/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
GTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACGTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6055965‑6055813‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcacgttatGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA > NC_002947/6055876‑6056019 GTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACG < 2:193202/149‑1 CATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAAGTCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCC > 1:268053/1‑148 CGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGA < 7:280430/125‑1 CGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGA > 8:280430/1‑125 ACGCAAGTTATGAACCTTACAGAATTACGCTACATCGTCACACTAGCCCAGGAACATCACTTCGGCCATTCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTAGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTG < 1:232482/148‑1 ACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTC < 4:363970/149‑1 ACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTC < 6:277484/149‑1 GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA < 6:178877/149‑1 GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCACTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA < 6:45855/149‑1 GTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAA‑TCGATAGACGCACGTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6055965‑6055813‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcacgttatGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGT‑GTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA > NC_002947/6055876‑6056019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |