New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1189708 =	41 (0.700)	3 (0.050)	3/242	NT	7.5%	coding (106/762 nt)	tatC‑I	Sec‑independent protein translocase protein
	?	NC_002947	1189773 =	36 (0.650)					coding (41/762 nt)	tatC‑I	Sec‑independent protein translocase protein

ACAGGGCGCACATCGCGGTCAGCTTGAACGGTGCCAGAAAGGGCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCAT  >  NC_002947/1189561‑1189853                                                                                                                                                     |                                                                                                                                                   aCAGGGCGCACATCGCGGTCAGCTTGAACGGTGCCAGAAAGGGCGAGGTGACGGCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGc                                                                                                                                                    >  1:97066/1‑149 (MQ=255)    gcacctctgcaacgcctggaacaggagatccgccagggcatcagcctgaacgcggaaccggccaatgatgcggccacggccgtgctgcccaaggaaaatgcttcatgagtatcgccatggaccctgccgcgagcatgcccctgacCGaa                                                                                                                                                 <  1:222302‑M1/4‑1 (MQ=255)                        ttGAACGGTGCCAGAAAGGGCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAg                                                                                                                            >  1:107022/1‑149 (MQ=255)                             cGGTGCCAGAAAGGGCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑Ac                                                                                                                      >  8:198851/1‑149 (MQ=255)                                  ccAGAAAGGGCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCAc                                                                                                                  <  3:29583/148‑1 (MQ=255)                                   cAGAAAGGGCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCAc                                                                                                                  >  1:148330/1‑147 (MQ=255)                                   cAGAAAGGGCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCAc                                                                                                                  >  5:35447/1‑147 (MQ=255)                                   cAGAAAGGGCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCa                                                                                                                <  4:16003/149‑1 (MQ=255)                                          ggCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGttt                                                                                                         <  6:35447/149‑1 (MQ=255)                                             gAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTgcg                                                                                                      <  6:116526/149‑1 (MQ=255)                                              aGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGCCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTgcgc                                                                                                     <  6:172685/149‑1 (MQ=255)                                                  gAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAAt                                                                                                                                          >  2:252511/1‑109 (MQ=255)                                                  gAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAAt                                                                                                                                          <  1:252511/109‑1 (MQ=255)                                                          gtggCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCgcgc                                                                                            <  7:145143/147‑1 (MQ=255)                                                               gATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGtt                                                                                     <  2:97066/149‑1 (MQ=255)                                                                  caatgatgcggccacggccgtgctgcccaaggaaaatgcttcatgagtatcgccatggaccctgccgcgagcatgcccctgacCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCgg                                                                                  >  2:231532‑M1/84‑149 (MQ=255)                                                                     gCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGt                                                                                 >  7:185504/1‑147 (MQ=255)                                                                       tCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAgg                                                                             >  7:328915/1‑149 (MQ=255)                                                                         gcgcCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAgggg                                                                           >  4:230470/1‑149 (MQ=255)                                                                         gcgcCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAggg                                                                            <  2:107022/148‑1 (MQ=255)                                                                             ccacggccgtgctgcccaaggaaaatgcttcatgagtatcgccatggaccctgccgcgagcatgcccctgacCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGtt                                                                                     >  6:298494‑M1/73‑135 (MQ=255)                                                                             ccacggccgtgctgcccaaggaaaatgcttcatgagtatcgccatggaccctgccgcgagcatgcccctgacCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGtt                                                                                     <  5:298494‑M1/63‑1 (MQ=255)                                                                             cTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCGCCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATg                                                                       >  7:197279/1‑149 (MQ=255)                                                                             cTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATg                                                                       <  3:230470/149‑1 (MQ=255)                                                                              ttCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCAc                                                                                                                  <  4:36094/105‑1 (MQ=255)                                                                              ttCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCAc                                                                                                                  >  3:36094/1‑105 (MQ=255)                                                                                 cGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGtt                                                                                     >  4:319663/1‑131 (MQ=255)                                                                                 cGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGtt                                                                                     <  3:319663/131‑1 (MQ=255)                                                                                  ggCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTcgc                                                                  <  8:328915/149‑1 (MQ=255)                                                                                      aaaaGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCa                                                              <  7:198851/149‑1 (MQ=255)                                                                                            gcCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTc                                                         >  8:145871/1‑148 (MQ=255)                                                                                            gcCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTc                                                         >  2:36767/1‑148 (MQ=255)                                                                                                                 gCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCAt                                   >  4:42288/1‑149 (MQ=255)                                                                                                                    tgtACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGCACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCCTGAAGCAtttt                                >  2:305624/1‑149 (MQ=255)                                                                                                                       aCAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGt                                                          <  4:114582/120‑1 (MQ=255)                                                                                                                       aCAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGt                                                          >  3:114582/1‑120 (MQ=255)                                                                                                                         aGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTg                           >  2:295115/1‑149 (MQ=255)                                                                                                                         aGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTg                           >  2:222302/1‑149 (MQ=255)                                                                                                                                gggCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCAGACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGgcag                      >  1:87329/1‑148 (MQ=255)                                                                                                                                 ggCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATg                                                     >  4:330642/1‑115 (MQ=255)                                                                                                                                 ggCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATg                                                     <  3:330642/115‑1 (MQ=255)                                                                                                                                       ggggAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTc                                                                                    <  3:91254/78‑1 (MQ=255)                                                                                                                                       ggggAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTc                                                                                    >  4:91254/1‑78 (MQ=255)                                                                                                                                          gAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGc          >  5:323892/1‑149 (MQ=255)                                                                                                                                            aCAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCg        >  3:57459/1‑149 (MQ=255)                                                                                                                                             cAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGc       <  8:185504/149‑1 (MQ=255)                                                                                                                                                  cGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTTCGCAGGTGGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGcatcat  >  8:199738/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACAGGGCGCACATCGCGGTCAGCTTGAACGGTGCCAGAAAGGGCGAGGTGAC‑GCTGGTGGCGATCATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCAT  >  NC_002947/1189561‑1189853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.