New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1189708 =	41 (0.700)	3 (0.050)	3/242	NT	7.5%	coding (106/762 nt)	tatC‑I	Sec‑independent protein translocase protein
	?	NC_002947	1189773 =	36 (0.650)					coding (41/762 nt)	tatC‑I	Sec‑independent protein translocase protein

CATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCTGGCGGATCTCCTGTTCCAGGCGTTGCAGAGGTGCCTGG  >  NC_002947/1189625‑1189921                                                                                                                                                      |                                                                                                                                                     caatgatgcggccacggccgtgctgcccaaggaaaatgcttcatgagtatcgccatggaccctgccgcgagcatgcccctgacCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCgg                                                                                                                                                      >  2:231532‑M1/84‑149 (MQ=255)    gCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGt                                                                                                                                                     >  7:185504/1‑147 (MQ=255)      tCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAgg                                                                                                                                                 >  7:328915/1‑149 (MQ=255)        gcgcCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAgggg                                                                                                                                               >  4:230470/1‑149 (MQ=255)        gcgcCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAggg                                                                                                                                                <  2:107022/148‑1 (MQ=255)            cTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCGCCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATg                                                                                                                                           >  7:197279/1‑149 (MQ=255)            cTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATg                                                                                                                                           <  3:230470/149‑1 (MQ=255)                 ggCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTcgc                                                                                                                                      <  8:328915/149‑1 (MQ=255)                     aaaaGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCa                                                                                                                                  <  7:198851/149‑1 (MQ=255)                           gcCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTc                                                                                                                             >  8:145871/1‑148 (MQ=255)                           gcCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTc                                                                                                                             >  2:36767/1‑148 (MQ=255)                                                gCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCAt                                                                                                       >  4:42288/1‑149 (MQ=255)                                                   tgtACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGCACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCCTGAAGCAtttt                                                                                                    >  2:305624/1‑149 (MQ=255)                                                      aCAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGt                                                                                                                              >  3:114582/1‑120 (MQ=255)                                                      aCAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGt                                                                                                                              <  4:114582/120‑1 (MQ=255)                                                        aGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTg                                                                                               >  2:295115/1‑149 (MQ=255)                                                        aGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTg                                                                                               >  2:222302/1‑149 (MQ=255)                                                               gggCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCAGACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGgcag                                                                                          >  1:87329/1‑148 (MQ=255)                                                                ggCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATg                                                                                                                         <  3:330642/115‑1 (MQ=255)                                                                ggCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATg                                                                                                                         >  4:330642/1‑115 (MQ=255)                                                                         gAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGc                                                                              >  5:323892/1‑149 (MQ=255)                                                                           aCAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCg                                                                            >  3:57459/1‑149 (MQ=255)                                                                            cAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGc                                                                           <  8:185504/149‑1 (MQ=255)                                                                                 cGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTTCGCAGGTGGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGcatcat                                                                      >  8:199738/1‑149 (MQ=255)                                                                                    ccgaacacctgcgcgacctgcgcaaacgcctggtgcgttgcctggcgctggtggcattggtgttcgGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTg                                                                    >  2:231532‑M2/67‑149 (MQ=255)                                                                                     GAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGc                                                                  <  5:59511‑M1/149‑1 (MQ=255)                                                                                       aacacctgcgcgacctgcgcaaacgcctggtgcgttgcctggcgctggtggcattggtgttcgGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTgg                                                                               <  5:298494‑M2/72‑1 (MQ=255)                                                                                       aacacctgcgcgacctgcgcaaacgcctggtgcgttgcctggcgctggtggcattggtgttcgGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTgg                                                                               >  6:298494‑M2/64‑135 (MQ=255)                                                                                       ACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCg                                                                >  1:36767‑M1/1‑149 (MQ=255)                                                                                           CAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTc                                                            <  6:117677‑M1/149‑1 (MQ=255)                                                                                           CAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTT‑CCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTcc                                                           <  7:214414‑M1/149‑1 (MQ=255)                                                                                                 caccaGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGtt                                                      >  6:110037/1‑149 (MQ=255)                                                                                                  accaGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTc                                                     <  2:87329/149‑1 (MQ=255)                                                                                                   ccaGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCa                                                    <  4:101353/149‑1 (MQ=255)                                                                                                     aGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAgg                                                  <  7:145871/149‑1 (MQ=255)                                                                                                     aGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAgg                                                  <  6:323892/149‑1 (MQ=255)                                                                                                      gcgcCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGc                                                 >  1:49648/1‑149 (MQ=255)                                                                                                      gcgcCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGc                                                 <  4:57459/149‑1 (MQ=255)                                                                                                         ccAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGa                                              >  4:345255/1‑149 (MQ=255)                                                                                                           aGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATg                                            <  3:345255/149‑1 (MQ=255)                                                                                                           aGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATg                                            >  3:343994/1‑149 (MQ=255)                                                                                                                 aCGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCTg                                       <  6:59511/149‑1 (MQ=255)                                                                                                                                gcgcAGGTCGCGCAGGTGTTCGGTCAGGTGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCTGGCGGATCTCCTGtt                         <  5:117677/148‑1 (MQ=255)                                                                                                                                 cgcAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCTGGCGGATCTCCTGTTc                        >  1:234259/1‑148 (MQ=255)                                                                                                                                    aGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCTGGCGGATCTCCTGTTCCAgg                    >  6:192671/1‑149 (MQ=255)                                                                                                                                         gcgcAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAACACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCTGGCGGATCTCCTGTTCCAGGCGTTg               >  1:55963/1‑149 (MQ=255)                                                                                                                                             aGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCGGGCGGATCTCCTGTTCCAGGCGTTGCa             >  5:332296/1‑147 (MQ=255)                                                                                                                                                  ttcgGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCTGGCGGATCTCCTGTTCCAGGCGTTGCAGAGGTGc      <  1:222302‑M2/145‑1 (MQ=255)                                                                                                                                                      gTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGGGGCCGCATCATTGGCCGGTTCCGCTTTCAGGCTGATGCCCTGGCTGATCGCCTGTTCCAGGCGTTGCAGAGGTGCCTgg  >  5:262627/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CATGCTCGCGCCTTCCGGCAAAAAGCGCCGTAGCGGCTCGGATATGAGCGTGTACAGTGTCTGGGCAAAGGGGAACAGGCCGGCGAACACCAATGCCACCAGCGCCAGGCA‑ACGCACCAGGCGTTTGCGCAGGTCGCGCAGGTGTTCGGTCAGGGGCATGCTCGCGGCAGGGTCCATGGCGATACTCATGAAGCATTTTCCTTGGGCAGCACGGCCGTGGCCGCATCATTGGCCGGTTCCGCGTTCAGGCTGATGCCCTGGCGGATCTCCTGTTCCAGGCGTTGCAGAGGTGCCTGG  >  NC_002947/1189625‑1189921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.