New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1798151 =	44 (0.750)	5 (0.090)	4/254	NT	11.9%	coding (74/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798208 =	31 (0.540)					coding (131/1128 nt)	lpxB	lipid‑A‑disaccharide synthase

CGGCCACGCAACACCCTGAGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTC  >  NC_002947/1798003‑1798296                                                                                                                                                     |                                                                                                                                                    cGGCCACGCAACACCCTGAGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGc                                                                                                                                                     >  6:70332/1‑149 (MQ=255)   gatgaatacgtcgggcttttcttcgatcagggtctggatcagcagcttgcggcgcttgagcagttcgcgcaggcgccccagtacctcgactagccccatgacggccaggcgctccatggggaaataggattgcaggccctcggcctcc                                                                                                                                                    <  3:283224‑M1/2‑1 (MQ=255)     cACGCAACACCCTGAGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTc                                                                                                                                                 <  3:334003/149‑1 (MQ=255)         cAACACCCTGAGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAgg                                                                                                                                             <  2:95533/149‑1 (MQ=255)          aaCACCCTGAGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGgc                                                                                                                                            >  4:129866/1‑149 (MQ=255)          aaCACCCTGAGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGgc                                                                                                                                            >  4:36494/1‑149 (MQ=255)             acCCTGAGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGgcgc‑g                                                                                                                                        >  5:350703/1‑149 (MQ=255)                   aGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑ccc                                                                                                                                 >  2:220180/1‑149 (MQ=255)                           cTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGc                                                                                                                         <  5:328608/149‑1 (MQ=255)                                   tCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATc                                                                                                                 >  5:6427/1‑149 (MQ=255)                                     aGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCgg                                                                                                               <  6:6427/149‑1 (MQ=255)                                      gTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTTATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAATGCGC‑GCCA‑CCCCGACGTGCGTTTCATCggg                                                                                                              <  6:155171/149‑1 (MQ=255)                                      gTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCggg                                                                                                              <  3:36494/149‑1 (MQ=255)                                       tCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGTCTTGATGCGTGccc                                                                                                                                                   <  3:108140/113‑1 (MQ=255)                                       tCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGccc                                                                                                                                                   >  4:108140/1‑113 (MQ=255)                                           tCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTgg                                                                                                         >  3:236865/1‑149 (MQ=255)                                           agcagcttgcggcgcttgagcagttcgcgcaggcgccccagtacctcgactagccccatgacggccaggcgctccatggggaaataggattgcaggccctcggcctCCATCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTgg                                                                                                         >  2:32128‑M1/107‑149 (MQ=255)                                             cagcttgcggcgcttgagcagttcgcgcaggcgccccagtacctcgactagccccatgacggccaggcgctccatggggaaataggattgcaggccctcggcctCCATCAAGGGGCCGCCAACCCCGACGTGCGTTTCATCGGGGTTgg                                                                                                         >  6:180500‑M1/105‑149 (MQ=255)                                              tGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTggcgg                                                                                                      >  5:156820/1‑149 (MQ=255)                                                aGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTggcggc                                                                                                     <  3:231585/148‑1 (MQ=255)                                                 gCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCAATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGccc                                                                                                   <  6:163949/149‑1 (MQ=255)                                                        gcgtgagcacttcgcgcaggcgcccccgtacctcgactagccccatgacggccaggcgctccatggggaaataggattgcaggccctcggcctCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATg                                                                                            >  6:346848‑M1/94‑149 (MQ=255)                                                          gcgGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGa                                                                                          <  6:350703/149‑1 (MQ=255)                                                           cgGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAg                                                                                         <  3:129866/149‑1 (MQ=255)                                                           cgGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAg                                                                                         >  1:125432/1‑149 (MQ=255)                                                              cATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAgg                                                                                        <  2:125432/147‑1 (MQ=255)                                                                tCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGcc                                                                                      >  5:6370/1‑147 (MQ=255)                                                                    gcgcTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGc                                                                                                                         <  7:142902/108‑1 (MQ=255)                                                                    gcgcTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGc                                                                                                                         >  8:142902/1‑108 (MQ=255)                                                                       cTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTg                                                                             <  8:279108/149‑1 (MQ=255)                                                                       cTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTg                                                                             <  5:70332/149‑1 (MQ=255)                                                                       cTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTg                                                                             <  1:220180/149‑1 (MQ=255)                                                                        tGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAg                                                                                         <  2:341587/136‑1 (MQ=255)                                                                        tGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAg                                                                                         >  1:341587/1‑136 (MQ=255)                                                                            atGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGtt                                                                                                                      <  3:318923/103‑1 (MQ=255)                                                                            atGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGtt                                                                                                                      >  4:318923/1‑103 (MQ=255)                                                                            atGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGACGAGGGCCTGCAATc                                                                        >  6:106163/1‑149 (MQ=255)                                                                             gccccagtacctcgactagccccatgacggccaggcgctccatggggaaataggattgcaggccctcggcctCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAgg                                                                                        <  5:307173‑M1/60‑1 (MQ=255)                                                                             gccccagtacctcgactagccccatgacggccaggcgctccatggggaaataggattgcaggccctcggcctCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAgg                                                                                        >  6:307173‑M1/73‑132 (MQ=255)                                                                                    gCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTcc                                                                <  6:156820/149‑1 (MQ=255)                                                                                     cTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTccc                                                               >  8:133713/1‑149 (MQ=255)                                                                                         gCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCAt                                                            <  7:133713/148‑1 (MQ=255)                                                                                             aGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAgc                                                       >  4:313181/1‑149 (MQ=255)                                                                                               cgcTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAgcgc                                                     <  4:333768/149‑1 (MQ=255)                                                                                                 cTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTAttt                                                                  <  6:113009/134‑1 (MQ=255)                                                                                                 cTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTAttt                                                                  >  5:113009/1‑134 (MQ=255)                                                                                                    gTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGc                                                >  3:28178/1‑149 (MQ=255)                                                                                                           gTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATg                                         <  6:6370/149‑1 (MQ=255)                                                                                                                gCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGATGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGc                                     >  5:186153/1‑148 (MQ=255)                                                                                                                  cAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAg                                  >  7:255465/1‑149 (MQ=255)                                                                                                                        cGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAgg                            <  4:28178/149‑1 (MQ=255)                                                                                                                                    ttCAGGCGTGATGCGGGCCCGCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGTTGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGcc                <  4:236865/149‑1 (MQ=255)                                                                                                                                       aGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTgc             <  5:106163/149‑1 (MQ=255)                                                                                                                                        ggCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTgcg            >  6:92608/1‑149 (MQ=255)                                                                                                                                                 cGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCt   <  3:313181/149‑1 (MQ=255)                                                                                                                                                    gCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTc  >  7:150870/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGGCCACGCAACACCCTGAGGTCGAGCTGTTCCGTCAGTCGATCCTGAGCTCCGCTCGCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGC‑GCCA‑CCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTC  >  NC_002947/1798003‑1798296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.