New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1798151 =	44 (0.750)	5 (0.090)	4/254	NT	11.9%	coding (74/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798208 =	31 (0.540)					coding (131/1128 nt)	lpxB	lipid‑A‑disaccharide synthase

GCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGC  >  NC_002947/1798060‑1798356                                                                                                                                                     |                                                                                                                                                     gcgGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGa                                                                                                                                                      <  6:350703/149‑1 (MQ=255)  cgGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAg                                                                                                                                                     <  3:129866/149‑1 (MQ=255)  cgGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAg                                                                                                                                                     >  1:125432/1‑149 (MQ=255)     cATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAgg                                                                                                                                                    <  2:125432/147‑1 (MQ=255)       tCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGcc                                                                                                                                                  >  5:6370/1‑147 (MQ=255)              cTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTg                                                                                                                                         <  1:220180/149‑1 (MQ=255)              cTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTg                                                                                                                                         <  8:279108/149‑1 (MQ=255)              cTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTg                                                                                                                                         <  5:70332/149‑1 (MQ=255)               tGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAg                                                                                                                                                     >  1:341587/1‑136 (MQ=255)               tGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAg                                                                                                                                                     <  2:341587/136‑1 (MQ=255)                   atGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGACGAGGGCCTGCAATc                                                                                                                                    >  6:106163/1‑149 (MQ=255)                    gccccagtacctcgactagccccatgacggccaggcgctccatggggaaataggattgcaggccctcggcctCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAgg                                                                                                                                                    >  6:307173‑M1/73‑132 (MQ=255)                    gccccagtacctcgactagccccatgacggccaggcgctccatggggaaataggattgcaggccctcggcctCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAgg                                                                                                                                                    <  5:307173‑M1/60‑1 (MQ=255)                           gCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTcc                                                                                                                            <  6:156820/149‑1 (MQ=255)                            cTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTccc                                                                                                                           >  8:133713/1‑149 (MQ=255)                                gCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCAt                                                                                                                        <  7:133713/148‑1 (MQ=255)                                    aGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAgc                                                                                                                   >  4:313181/1‑149 (MQ=255)                                      cgcTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAgcgc                                                                                                                 <  4:333768/149‑1 (MQ=255)                                        cTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTAttt                                                                                                                              >  5:113009/1‑134 (MQ=255)                                        cTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTAttt                                                                                                                              <  6:113009/134‑1 (MQ=255)                                           gTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGc                                                                                                            >  3:28178/1‑149 (MQ=255)                                                  gTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATg                                                                                                     <  6:6370/149‑1 (MQ=255)                                                       gCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGATGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGc                                                                                                 >  5:186153/1‑148 (MQ=255)                                                         cAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAg                                                                                              >  7:255465/1‑149 (MQ=255)                                                               cGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAgg                                                                                        <  4:28178/149‑1 (MQ=255)                                                                           ttCAGGCGTGATGCGGGCCCGCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGTTGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGcc                                                                            <  4:236865/149‑1 (MQ=255)                                                                              aGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTgc                                                                         <  5:106163/149‑1 (MQ=255)                                                                               ggCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTgcg                                                                        >  6:92608/1‑149 (MQ=255)                                                                                        cGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCt                                                               <  3:313181/149‑1 (MQ=255)                                                                                         cctccatcaaggggccgccaaccccgatgaaacgcacgtcggggtggcgcgccttgagggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGgc                                                                               >  6:307173‑M2/61‑132 (MQ=255)                                                                                         cctccatcaaggggccgccaaccccgatgaaacgcacgtcggggtggcgcgccttgagggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGgc                                                                               <  5:307173‑M2/72‑1 (MQ=255)                                                                                           gCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTc                                                              >  7:150870/1‑147 (MQ=255)                                                                                             catcaaggggccgccaaccccgatgaaacgcacgtcggggtggcgcgccttgagggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACGGGGGCGCCTGCGCGAAGTGCTCACgc                                                          >  6:346848‑M2/57‑149 (MQ=255)                                                                                                    gcgcgcCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTc                                                                                            >  4:234432/1‑108 (MQ=255)                                                                                                    gcgcgcCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTc                                                                                            <  3:234432/108‑1 (MQ=255)                                                                                                        ccaaccccgatgaaacgcacgtcggggttggcggccccttgatggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAgctg                                               >  6:180500‑M2/46‑149 (MQ=255)                                                                                                          ccaaccccgatgaaacgcacgtcggggtggcgcgccttgatggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAgctgct                                             >  2:32128‑M2/44‑149 (MQ=255)                                                                                                                            aTCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGATCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATc                             >  7:283320/1‑147 (MQ=255)                                                                                                                            aTCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGATCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATc                             <  8:283320/147‑1 (MQ=255)                                                                                                                                 ggTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCgaagaa                       >  8:102778/1‑148 (MQ=255)                                                                                                                                   ttGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAg                    >  2:75221/1‑149 (MQ=255)                                                                                                                                       cggcCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCg                <  8:150870/149‑1 (MQ=255)                                                                                                                                             cTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCa                                       <  2:49699/120‑1 (MQ=255)                                                                                                                                             cTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTAt          >  4:283224/1‑149 (MQ=255)                                                                                                                                             cTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTAt          <  7:102778/149‑1 (MQ=255)                                                                                                                                                   ggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATc     <  3:283224‑M2/146‑1 (MQ=255)                                                                                                                                                     aGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGc  <  8:255465/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCGGCATCACGCGCTGATATGGCCCAGCTTTGCGTAGCGCTGGTCGCCGGTGAGGCCAGTGGCGATATCCTTGGTTCAGGCTTGATGCGTGCCCTCAAGGCGCGCCACCCCGACGTGCGTTTCATCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGC  >  NC_002947/1798060‑1798356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.