New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1900862 =	44 (0.750)	4 (0.070)	4/252	NT	8.9%	coding (1413/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1900910 =	39 (0.680)					coding (1461/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase

CCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGAC  >  NC_002947/1900714‑1901006                                                                                                                                                     |                                                                                                                                                 aggccactggcgcggctgtgtccgcaattcggcatagccgataccgcgcaggtcataaccggtggaggggttgtggaagcggcgtatttcctcatacaccgcttcggcattggggtagtcgaaggcgtcggcatagcccatggcacacg                                                                                                                                                  <  8:239614‑M1/1‑1 (MQ=255)  ggccactggcgcggctgtgtccgcaattcggcatagccgataccgcgcaggtcataaccggttgaggggttgtggaagcggcgtatttcctcatacaccgcttcggcattggggtagtcgaaggcgtcggcatagcccatggcacacGc                                                                                                                                                 <  2:185456‑M1/2‑1 (MQ=255)                 ccAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCt                                                                                                                                  >  4:201066/1‑149 (MQ=255)                 ccAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCt                                                                                                                                  >  3:70301/1‑149 (MQ=255)                          cTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGGCt                                                                                                                         >  8:286412/1‑149 (MQ=255)                           ttCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACt                                                                                                                         >  4:171012/1‑148 (MQ=255)                           ttCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTg                                                                                                                        >  3:27014/1‑149 (MQ=255)                           ttCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTg                                                                                                                        >  3:21998/1‑149 (MQ=255)                              cTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGGTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCaaa                                                                                                                                     <  6:18332/133‑1 (MQ=255)                              cTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCaaa                                                                                                                                     >  5:18332/1‑133 (MQ=255)                              cTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTgg                                                                                                                       >  6:320854/1‑147 (MQ=255)                              cTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTgg                                                                                                                       >  3:290511/1‑147 (MQ=255)                                    acCGAAACCAAACGTTACGCAGCCATCCTGCTGCCGGACGCGCTGAGTGCCGAAGGCGAGGGTGAGAAGATCAACAGCGAGCGCAACCTCACCCTCATGCAACTCGCTGTCGAGAACCACGGGCAAAGCTTGCCGGAATTGCAGAACAt                                                                                                               >  5:338477/1‑149 (MQ=255)                                      cGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCgg                                                                                                                            <  2:372479/134‑1 (MQ=255)                                      cGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCgg                                                                                                                            >  1:372479/1‑134 (MQ=255)                                      cGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTg                                                                                                             >  6:210456/1‑149 (MQ=255)                                        gataccgcgcaggtcataaccggtggaggggttgtggaagcggcgtatttcctcatacaccgcttcggcattggggtagtcgaaggcgtcggcatagcccatggcacacGCCACGCGGGCAAAGCTTGCCGGACTGGCAGATCATTGcc                                                                                                           >  7:239614‑M1/110‑149 (MQ=255)                                        aaaCCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGcc                                                                                                           <  4:27014/149‑1 (MQ=255)                                        aaaCCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGcc                                                                                                           <  4:21998/149‑1 (MQ=255)                                             aaccGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCgcgt                                                                                                      >  3:267464/1‑149 (MQ=255)                                              gcgcaggtcataaccggttgaggggttgtggaagcggcgtatttcctcatacaccggttcggcattggggtagtcgaaggcgtcggcatagcccatggcacacGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCgcgtg                                                                                                     >  6:378087‑M1/104‑149 (MQ=255)                                                     cGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCgtgt                                                                                               <  6:97255/148‑1 (MQ=255)                                                     cGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGtgtg                                                                                              >  3:209771/1‑149 (MQ=255)                                                      gCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGc                                                                                             <  3:201066/149‑1 (MQ=255)                                                           cATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATgg                                                                                        <  3:164283/149‑1 (MQ=255)                                                            aTCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGGCTGGCAGATCATTGCCCGCGTGGCGTGTGCCATggg                                                                                       <  7:286412/149‑1 (MQ=255)                                                                tgctgcCGGCCGCGCTGTGGGCTGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTAt                                                                                   >  1:332998/1‑149 (MQ=255)                                                                     ccggccgCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGa                                                                              <  5:320854/149‑1 (MQ=255)                                                                         gtggaagcggcgtatttcctcatacaccgcttcggcattggggtagtcgaaggcgtcggcatagcccatggcacacGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCgcgtgg                                                                                                    <  6:296410‑M1/47‑1 (MQ=255)                                                                         gtggaagcggcgtatatcctcatacaccgcttcggcattggggtagtcgaaggcgtcggcatagcccatggcacacGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCgcgtgg                                                                                                    >  5:296410‑M1/77‑123 (MQ=255)                                                                              cTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGCGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGa                                                                     <  5:198826/149‑1 (MQ=255)                                                                                 tgGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTa                                                                  <  4:290511/149‑1 (MQ=255)                                                                                    gCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCAAACAAAGCTTGCCGGAAAGGCAGATAATTGCCCCCCTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTAccc                                                               >  1:301302/1‑149 (MQ=255)                                                                                      cGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTAcccc                                                              >  4:16543/1‑148 (MQ=255)                                                                                       gAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCaa                                                            >  2:23866/1‑149 (MQ=255)                                                                                        aaGGCGAGGGTGTGATGATCAACATCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAAt                                                           <  4:70301/149‑1 (MQ=255)                                                                                        aaGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAAt                                                           >  8:36614/1‑149 (MQ=255)                                                                                              aGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGACAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGaa                                                     <  3:171012/149‑1 (MQ=255)                                                                                               gggTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTTCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGaa                                                     <  4:209771/148‑1 (MQ=255)                                                                                                    tgatgaTCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGgt                                                <  4:267464/148‑1 (MQ=255)                                                                                                           cAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAg                                         >  8:281698/1‑148 (MQ=255)                                                                                                                            tGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAg                                                    >  6:208191/1‑120 (MQ=255)                                                                                                                            tGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAg                                                    <  5:208191/120‑1 (MQ=255)                                                                                                                             gACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGc                                                                                 >  2:93905/1‑90 (MQ=255)                                                                                                                             gACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGaa                                                     >  6:311053/1‑118 (MQ=255)                                                                                                                             gACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGaa                                                     <  5:311053/118‑1 (MQ=255)                                                                                                                             gACCCTGATGCCACGCGCTGTCGAGCCACCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCcac                       >  5:114761/1‑148 (MQ=255)                                                                                                                                ccTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAAcc                   >  1:281792/1‑149 (MQ=255)                                                                                                                                      gCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCt                            >  4:61781/1‑134 (MQ=255)                                                                                                                                      gCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCt                            <  3:61781/134‑1 (MQ=255)                                                                                                                                                  cGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGAc  <  5:210456/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGAC  >  NC_002947/1900714‑1901006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.