New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 203794748 (0.820)4 (0.070) 4/236 NT 7.9% noncoding (70/89 nt) PP_mr27 C4 ncRNA
?NC_002947 = 2038002 49 (0.910)noncoding (15/89 nt) PP_mr27 C4 ncRNA

TCCAGGGTGGGGTTGCCGGCTTCGAGGAAGGTTTCGATGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGG  >  NC_002947/2037804‑2038094
                                                                                                                                                |                                                                                                                                                    
tCCAGGGTGGGGTTGCCGGCTTCGAGGAAGGTTTCGATGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACggg                                                                                                                                                 <  3:103418/149‑1 (MQ=255)
   aGGGTGGGGGTGCCGGCGTCGATGAACGTTTCGCTGCCCGCCGGGAGGCCGGGGGATTGGTTGGTGTTTTTCATGGGAGTTGCGCCTGATAGGTTCGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGt                                                                                                                                               <  1:96609/149‑1 (MQ=255)
            ttGCCGGCTTCGAGGAAGGTTTCGATGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGa                                                                                                                                     <  7:145139/149‑1 (MQ=255)
              gCCGGCTTCGAGGAAGGTTTCGATGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAg                                                                                                                                    <  3:188230/148‑1 (MQ=255)
               ccGGCTTCGAGGAAGGTTTCGATGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAgg                                                                                                                                   >  2:4661/1‑148 (MQ=255)
                    ttCGAGGAAGGTTTCGATGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTa                                                                                                                            >  4:74505/1‑149 (MQ=255)
                          gAAGGTTTCGATGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGc                                                                                                                      >  6:14865/1‑149 (MQ=255)
                                    aTGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGATCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGAc                                                                                                            >  5:140798/1‑149 (MQ=255)
                                        cTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACGAAGCTCGGCCAGACCGaa                                                                                                        <  2:355354/149‑1 (MQ=255)
                                         tGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAg                                                                                                       >  4:113529/1‑149 (MQ=255)
                                          gCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGt                                                                                                      >  4:370461/1‑149 (MQ=255)
                                           cGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGCGAGCTACAAAGCTCGGCCAGACCGaa                                                                                                        <  1:4661/147‑1 (MQ=255)
                                                  gaggGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACgcgggcagacttcggtctggccgagctttgtagctccctcggtttctcaccccgt                                                                                               >  6:140549‑M1/1‑94 (MQ=255)
                                                     gggggATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCgta                                                                                           <  6:118707‑M2/149‑4 (MQ=255)
                                                     gggggATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCgta                                                                                           >  5:118707‑M2/1‑146 (MQ=255)
                                                           ttGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACgcgggcagacttcggtctggccgagctttgtagctccctcggtttctcaccccgtgtacgactg                                                                                      <  5:140549‑M1/149‑65 (MQ=255)
                                                              gttgttgttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCa                                                                                  <  5:14865/149‑1 (MQ=255)
                                                              gttgttgttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCa                                                                                  >  3:230402/1‑149 (MQ=255)
                                                               ttgttgttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGa                                                                                                                                <  7:300912/102‑1 (MQ=255)
                                                               ttgttgttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGa                                                                                                                                >  8:300912/1‑102 (MQ=255)
                                                               ttgttgttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCAt                                                                                 >  2:293404/1‑149 (MQ=255)
                                                                 gttgttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGc                                                                                                                 >  4:273927/1‑115 (MQ=255)
                                                                 gttgttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGc                                                                                                                 <  3:273927/115‑1 (MQ=255)
                                                                  ttgttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACa                                                                             <  5:267406/149‑1 (MQ=255)
                                                                    gttTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACa                                                                             <  3:370461/148‑1 (MQ=255)
                                                                     tttttCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAgg                                                                           <  3:113529/149‑1 (MQ=255)
                                                                         tCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCaa                                                                        <  4:230402/148‑1 (MQ=255)
                                                                         tCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCaa                                                                        <  3:74505/148‑1 (MQ=255)
                                                                         tCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAg                                                                       >  1:361103/1‑149 (MQ=255)
                                                                             ggTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAg                                                                   >  8:26330/1‑149 (MQ=255)
                                                                               tAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGATCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGt                                                                 <  6:140798/149‑1 (MQ=255)
                                                                                  ttGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACgcgggcagacttcggtctggccgagctttgtagctccctcggtttctcaccccgtgtac                                                                                           >  6:191204‑M1/1‑62 (MQ=255)
                                                                                  ttGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACgcgggcagacttcggtctggccgagctttgtagctccctcggtttctcaccccgtgtac                                                                                           <  5:191204‑M1/121‑60 (MQ=255)
                                                                                     cTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGAc                                                                              <  5:133203/130‑1 (MQ=255)
                                                                                     cTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGAc                                                                              >  6:133203/1‑130 (MQ=255)
                                                                                      tCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCaa                                                                        <  7:325084/135‑1 (MQ=255)
                                                                                      tCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCaa                                                                        >  8:325084/1‑135 (MQ=255)
                                                                                        cTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCa                                                         >  8:194532/1‑148 (MQ=255)
                                                                                        cTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCAt                                                        <  7:26330/149‑1 (MQ=255)
                                                                                          gATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGCCCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCAt                                                        >  7:258438/1‑147 (MQ=255)
                                                                                          gATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCAt                                                        >  1:109662/1‑147 (MQ=255)
                                                                                               gTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGtt                                                  >  6:326044/1‑148 (MQ=255)
                                                                                                         ccACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTACCATGACAGGCAAGTCAGGt                                                                 <  1:141004/124‑1 (MQ=255)
                                                                                                         ccACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTACCATGACAGGCAAGTCAGGt                                                                 >  2:141004/1‑124 (MQ=255)
                                                                                                                gATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCAt                                                                                 <  6:63686/101‑1 (MQ=255)
                                                                                                                   cTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTc                                                            <  8:78736/119‑1 (MQ=255)
                                                                                                                   cTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTc                                                            >  7:78736/1‑119 (MQ=255)
                                                                                                                     ttCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATg                            >  6:175287/1‑149 (MQ=255)
                                                                                                                     ttCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACAGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGGCAGGTAGCTCGCATCAGGTTCTCACACCCGGGCACCAACATg                            >  7:312058/1‑149 (MQ=255)
                                                                                                                        tcACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGc                          >  6:231345/1‑148 (MQ=255)
                                                                                                                        tcACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGc                          >  1:147351/1‑148 (MQ=255)
                                                                                                                              aCCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTtct                                                <  6:216715/120‑1 (MQ=255)
                                                                                                                              aCCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTtct                                                >  5:216715/1‑120 (MQ=255)
                                                                                                                                  gggCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGAc               <  5:231345/149‑1 (MQ=255)
                                                                                                                                        cAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCgtacgactgccgccctggtccgtgagaaagatctgcgtggcagttccacctatcaggagcaactaccatgaaaaacaacaaccaa         <  5:140549‑M2/149‑86 (MQ=255)
                                                                                                                                          gTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATccc       <  7:194532/149‑1 (MQ=255)
                                                                                                                                             gTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCgtacgactgccgccctggtccgtgagaaagatctgcgtggcagttccacctatcaggagcaa                                <  5:191204‑M2/121‑63 (MQ=255)
                                                                                                                                             gTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCgtacgactgccgccctggtccgtgagaaagatctgcgtggcagttccacctatcaggagcaa                                >  6:191204‑M2/1‑59 (MQ=255)
                                                                                                                                              tACgcgggcagacttcggtctggccgagctttgtagctccctcggtttctcaccccgtgtacgactgccgccctggtccgtgagaaagatctgcgtggcagttccacctatcaggagcaactaccatgaaaaacaacaaccaatccccc    >  5:118707‑M1/1‑3 (MQ=255)
                                                                                                                                              tACgcgggcagacttcggtctggccgagctttgtagctccctcggtttctcaccccgtgtacgactgccgccctggtccgtgagaaagatctgcgtggcagttccacctatcaggagcaactaccatgaaaaacaacaaccaatccccc    <  6:118707‑M1/149‑147 (MQ=255)
                                                                                                                                               acacGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAgg  >  3:242842/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
TCCAGGGTGGGGTTGCCGGCTTCGAGGAAGGTTTCGATGCCTGCGGTGAGGAGGGGGGATTGGTTGTTGTTTTTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGG  >  NC_002947/2037804‑2038094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.