New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2202174 = | 49 (0.830) | 3 (0.050) | 3/240 | NT | 6.1% | intergenic (+31/‑150) | PP_1946/PP_1947 | short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein |
? | NC_002947 | 2202214 = | 47 (0.860) | intergenic (+71/‑110) | PP_1946/PP_1947 | short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein |
GCGTTCGGTTCTGTGGCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGGAGAGTT > NC_002947/2202026‑2202320 | gcgTTCGGTTCTGGGGGTGTGTGCTGCCTATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACTGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGAt < 8:342005/149‑1 (MQ=255) ttCGGTTCTGTGGCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTGTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATgct > 4:40619/1‑148 (MQ=255) cGGTTCTGTGGCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATgcgc < 8:82328/148‑1 (MQ=255) gCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGc > 7:84460/1‑149 (MQ=255) tgtgTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCa > 6:127107/1‑149 (MQ=255) tgtTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCAtt > 2:139507/1‑149 (MQ=255) ttCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGc > 7:33538/1‑149 (MQ=255) cTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCt < 3:9797/148‑1 (MQ=255) aCGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATgcgc > 8:103061/1‑127 (MQ=255) aCGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATgcgc < 7:103061/127‑1 (MQ=255) aCGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTg < 1:227057/147‑1 (MQ=255) ttGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAg < 5:45089/148‑1 (MQ=255) aaaaTACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTtatc > 8:337217/1‑129 (MQ=255) aaTACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAgg > 5:295603/1‑149 (MQ=255) cGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCa < 8:265408/149‑1 (MQ=255) tctccatttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGcc < 1:148810‑M1/6‑1 (MQ=255) ggCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAg < 7:227693/149‑1 (MQ=255) gCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGt < 8:33538/149‑1 (MQ=255) gCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGt > 3:309227/1‑149 (MQ=255) ccATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGtt > 1:54585/1‑149 (MQ=255) ttCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGGTAGGCGCACTATAAGTTTTa > 7:97410/1‑149 (MQ=255) ttCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTa < 6:295603/149‑1 (MQ=255) tattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTa > 1:106919‑M1/97‑148 (MQ=255) tGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCTAATGGATTATCTCTTTTAAATCCATGTAGCGTTTCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCTCACTATAAGTTTTATTTGa < 1:140856/149‑1 (MQ=255) tGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGCTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGa < 8:84460/149‑1 (MQ=255) tggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACtata > 4:259784‑M1/89‑133 (MQ=255) tggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACtata < 3:259784‑M1/45‑1 (MQ=255) gTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTg > 5:45911/1‑148 (MQ=255) gtggcgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATAGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTAt < 3:180539/133‑1 (MQ=255) gcgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGgcg < 8:282785/115‑1 (MQ=255) gcgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGgcg > 7:282785/1‑115 (MQ=255) gcgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGttt < 6:45911/149‑1 (MQ=255) cgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGtttt < 2:85561/149‑1 (MQ=255) gcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGa < 4:309227/149‑1 (MQ=255) aGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGAtt < 5:337497/149‑1 (MQ=255) gTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCtgtg < 5:127107/149‑1 (MQ=255) tCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCAATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGGTTTTTACCTGTGGGtattta > 3:205285/1‑149 (MQ=255) tGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCa < 1:139507/149‑1 (MQ=255) gatgatCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACg > 7:173543/1‑149 (MQ=255) tgatCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCt > 8:18662/1‑149 (MQ=255) tctcTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTc > 1:48568/1‑149 (MQ=255) ctctTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCt > 4:45083/1‑149 (MQ=255) ctTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCt < 1:26106/70‑1 (MQ=255) ctTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCt > 2:26106/1‑70 (MQ=255) ctTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTAc < 6:220545/121‑1 (MQ=255) ctTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTAc > 5:220545/1‑121 (MQ=255) ccATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACtt > 8:4470/1‑149 (MQ=255) tGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACttttt > 3:256658/1‑149 (MQ=255) tGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACttttt < 2:48568/149‑1 (MQ=255) ttGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACt > 3:95416/1‑148 (MQ=255) ttGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTg < 2:54585/149‑1 (MQ=255) gTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATa > 5:84908/1‑148 (MQ=255) gTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATa > 8:150746/1‑148 (MQ=255) tATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAAt > 4:169729/1‑149 (MQ=255) aTGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTgg > 5:82457/1‑99 (MQ=255) aTGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTgg < 6:82457/99‑1 (MQ=255) aTGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATg > 1:271681/1‑149 (MQ=255) ttaaTGGATGCGCCTAGTTCTCGCCATTTCTTGGTAAGGCTAGGCGCACTATAAGATTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTTGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATg < 3:40619/146‑1 (MQ=255) gATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGGAGAGt < 7:150746/148‑1 (MQ=255) gATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGGAGAGt > 7:124019/1‑148 (MQ=255) aTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGGAGAGtt < 3:45083/148‑1 (MQ=255) | GCGTTCGGTTCTGTGGCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGCGCACTATAAGTTTTATTTGATCTGAAATTTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGGAGAGTT > NC_002947/2202026‑2202320 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |