New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2780527 =	46 (0.780)	3 (0.050)	3/250	NT	5.8%	coding (301/480 nt)	PP_2433	hypothetical protein
	?	NC_002947	2780572 =	52 (0.910)					coding (346/480 nt)	PP_2433	hypothetical protein

GCCACCTGGTTGGTAAAGCTGACCGAACGCGGTGTGCTCACGCCGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCAAGGCACCACGCAGGTCGAAGAAATGC  >  NC_002947/2780383‑2780674                                                                                                                                                 |                                                                                                                                                    gccACCTGGTTGGTAAAGCTGACCGAACGCGGTGTGCTCACGCCGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCca                                                                                                                                                 >  2:123266/1‑149 (MQ=255)      cTGGTTGGTAAAGCTGACCGAACGCGGTGTGCTCACGCCGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCa                                                                                                                                            >  7:71001/1‑149 (MQ=255)      aaaatcacaggccatagccctcggcaatctgcagcagcatttcttcgacctgcgtggtgccttgctgggtggtgagcatctgcatcggcgtcaaccccgagaagcgttccttgggcttggaaagccagcggttggccttGCCCACAtcc                                                                                                                                            <  8:336501‑M1/10‑2 (MQ=255)            acaggccatagccctcggcaatctgcagcagcatttcttcgacctgcgtggtgccttgctgggtggtgagcatctgcatcggcgtcagccccgagaagcgttccttgggcttggaaagccagcgtttggccttGccc                                                                                                                                                  >  5:106462‑M1/134‑137 (MQ=255)            acaggccatagccctcggcaatctgcagcagcatttcttcgacctgcgtggtgccttgctgggtggtgagcatctgcatcggcgtcagccccgagaagcgttccttgggcttggaaagccagcgtttggccttGccc                                                                                                                                                  <  6:106462‑M1/4‑1 (MQ=255)                   cTGACCGAACGCGGTGTGCTCACGCCGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGcc                                                                                                                                 >  6:61612/1‑147 (MQ=255)                              cgGTGTGCTCACGCCGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCg                                                                                                                    <  8:71001/149‑1 (MQ=255)                                   tgCTCACGCCGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGaa                                                                                                               <  1:123266/149‑1 (MQ=255)                                        cagcagttcttcgacctgcgtggtgccttgctgggtggtgcgcatctgcatcggcgtcaaccccgagaagcgttccttgggcgtggaaagccagcgtttggccttGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCggg                                                                                                          >  7:336501‑M1/106‑149 (MQ=255)                                          gCCGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGc                                                                                                         >  2:233943/1‑148 (MQ=255)                                            cGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAg                                                                                                      >  7:221735/1‑149 (MQ=255)                                              gTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGc                                                                                                    >  3:156679/1‑149 (MQ=255)                                                 gAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCa                                                                                                  >  4:268076/1‑148 (MQ=255)                                                      cgACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCt                                                                                            >  7:13258/1‑149 (MQ=255)                                                          cAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCt                                                                                        <  2:273216/149‑1 (MQ=255)                                                                atcCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGc                                                                                                                                  <  2:95075/101‑1 (MQ=255)                                                                atcCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGc                                                                                                                                  >  1:95075/1‑101 (MQ=255)                                                                atcCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCaa                                                                                  <  1:52386/149‑1 (MQ=255)                                                                 tcCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAg                                                                                 <  4:156679/149‑1 (MQ=255)                                                                   ccGCTGCGCAGCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGc                                                                                <  4:90300/148‑1 (MQ=255)                                                                    cGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGcc                                                                               >  7:282308/1‑148 (MQ=255)                                                                     gCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGccc                                                                              >  6:190499/1‑148 (MQ=255)                                                                           cACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCaa                                                                            >  2:253058/1‑144 (MQ=255)                                                                           cACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCaa                                                                            <  1:253058/144‑1 (MQ=255)                                                                            aCCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACg                                                                      <  8:13258/149‑1 (MQ=255)                                                                              ccTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCt                                                                    >  8:293048/1‑149 (MQ=255)                                                                              ccTCAAATCCCGTATCGAGCGTAACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCt                                                                    >  7:57467/1‑149 (MQ=255)                                                                               gagcatctgcatcggcgtcagccccgagaagcgttccttgggcttggaaagccagcgtttggccttGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAgg                                                                                                     >  8:31119‑M1/67‑115 (MQ=255)                                                                               gagcatctgcatcggcgtcagccccgagaagcgttccttgggcttggaaagccagcgtttggccttGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAgg                                                                                                     <  7:31119‑M1/49‑1 (MQ=255)                                                                                tCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTtc                                                                  >  2:250310/1‑149 (MQ=255)                                                                                  aaaTCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTtctc                                                                <  7:293048/149‑1 (MQ=255)                                                                                     tCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCggg                                                             >  3:318034/1‑149 (MQ=255)                                                                                              gAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGcc                                                    <  3:268076/149‑1 (MQ=255)                                                                                               aGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCg                                                   <  5:190499/149‑1 (MQ=255)                                                                                                gCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGc                                                                                                             <  8:43595/90‑1 (MQ=255)                                                                                                 cGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGAt                                                 <  8:57467/149‑1 (MQ=255)                                                                                                  gTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATg                                                <  8:221735/149‑1 (MQ=255)                                                                                                   tGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGc                                               <  1:233943/149‑1 (MQ=255)                                                                                                        aaCCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATg                                          >  7:48203/1‑149 (MQ=255)                                                                                                        aaCCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATg                                          >  2:299945/1‑149 (MQ=255)                                                                                                         aCCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGc                                         >  7:202604/1‑149 (MQ=255)                                                                                                          ccGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCt                                        >  5:279212/1‑149 (MQ=255)                                                                                                           cGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTc                                       <  5:61612/149‑1 (MQ=255)                                                                                                             cTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAg                                             >  7:318026/1‑141 (MQ=255)                                                                                                             cTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAg                                             <  8:318026/141‑1 (MQ=255)                                                                                                                         gagaGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTcc                                                                                    >  4:11587/1‑90 (MQ=255)                                                                                                                         gagaGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTcc                                                                                    <  3:11587/90‑1 (MQ=255)                                                                                                                           gagCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCAAGGca                       >  3:215066/1‑149 (MQ=255)                                                                                                                               gATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCaa                           >  6:273249/1‑141 (MQ=255)                                                                                                                               gATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCaa                           <  5:273249/141‑1 (MQ=255)                                                                                                                                 tCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCAAGGCACCACGc                 <  8:48203/149‑1 (MQ=255)                                                                                                                                   ggCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCAAGGCACCACGCAg               <  1:250310/149‑1 (MQ=255)                                                                                                                                      tGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCAAGGCACCACGCAGGTc            <  1:299945/149‑1 (MQ=255)                                                                                                                                                ggCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCAAGGCACCACGCAGGTCGAAGAAAtgc  <  8:202604/149‑1 (MQ=255)                                                                                                                                                ggCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCAAGGCACCACGCAGGTCGAAGAAAt    <  8:282308/147‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GCCACCTGGTTGGTAAAGCTGACCGAACGCGGTGTGCTCACGCCGGTGGAGCGCGACCAGATCATCCCGCTGCGCACCCTCAAATCCCGTATCGAGCGTGACCAACCGCTGACCGTGGATGAGAGCGATCGGCTGTTCCGCTCGGCCCACATCACCGCCATGGCCGAGGCCGTGTTCGGTGAAGCGGGCAAGGCCAAACGCTGGCTTTCCAAGCCCAAGGAACGCTTCTCGGGGCTGACGCCGATGCAGATGCTCACCACCCAGCAAGGCACCACGCAGGTCGAAGAAATGC  >  NC_002947/2780383‑2780674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.