New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3045182 =	46 (0.780)	6 (0.110)	5/250	NT	11.6%	coding (724/969 nt)	pstC	phosphate ABC transporter permease
	?	NC_002947	3045215 =	47 (0.820)					coding (757/969 nt)	pstC	phosphate ABC transporter permease

GGCGGTTTCCCAGGATGCGCTGACCAGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAACGAGGTCGAAG  >  NC_002947/3045034‑3045326                                                                                                                                                     |                                                                                                                                                  tgatgaacatcagtaccagtgccgcgtacatcagcacttcgacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatg                                                                                                                                                   >  5:152699‑M1/149‑149 (MQ=255) tgatgaacatcagtaccagtgccgcgtacatcagcacttcgacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatg                                                                                                                                                   <  5:138534‑M1/1‑1 (MQ=255)  gatgaacatcagtaccagtgccgcgtacatcagcacttcgacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatgg                                                                                                                                                  <  1:169958‑M1/2‑1 (MQ=255)   atgaacatcagtaccagtgccgcgtacatcagcacttcgacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatGGc                                                                                                                                                 >  3:344802‑M1/147‑149 (MQ=255)      tttCCCAGGATGCGCTGACGAGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGt                                                                                                                                              <  2:238521/149‑1 (MQ=255)        tCCCAGGATGCGCTGACCAGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTTGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTg                                                                                                                                             <  3:116231/148‑1 (MQ=255)           cagtaccagtgccgcgtacatcagcacttcgacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatGGCCGTGCACt                                                                                                                                         <  3:336093‑M1/11‑1 (MQ=255)              gATGCGCTGACCAGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCgg                                                                                                                                      >  6:127861/1‑149 (MQ=255)               aTGCGCTGACCAGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCAGCATCTTCGGTTCGCTGGTGCACGGCCCAGGCCCAGCAccagcg                                                                                                                                     <  5:183423/149‑6 (MQ=255)                     tGACCAGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAAc                                                                                                                                >  1:238700/1‑148 (MQ=255)                        ccAGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATg                                                                                                                            <  4:198697/149‑1 (MQ=255)                          aGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGgc                                                                                                                          >  3:286731/1‑149 (MQ=255)                                  gcacttcgacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCa                                                                                                                  <  7:75789‑M1/34‑1 (MQ=255)                                    tGAAAACCAAGAAGGCTGCCTACGGCATGGGTACTACCAACTGGGAAGCCATCATCAAGGTGATGGTGCCCTCGGCGGATACCGGCATCTTCGGTTCGCTGTTGCAGGGCCTGGCCCGAGCAAACGGTGAAACCATGGAGCTGGCCATg                                                                                                                >  6:70098/1‑149 (MQ=255)                                     cttcgacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGc                                                                                                               >  8:75789‑M1/113‑149 (MQ=255)                                     cttcgacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGc                                                                                                               >  4:336093‑M1/113‑149 (MQ=255)                                      ttcgacctcgttcgggacggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCt                                                                                                              >  7:125936‑M1/112‑149 (MQ=255)                                       aaaCCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑g                                                                                                            >  6:234529/1‑149 (MQ=255)                                       aaaCCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑g                                                                                                            <  3:318119/149‑1 (MQ=255)                                         gacctcgttcgggccggcttccgggaagttcagcgccagcagcgccgccagggtgttggccggtgcgaacaaggacagggaaatggtgttggcgttgccgaccagcatGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑gg                                                                                                           >  4:305385‑M1/109‑148 (MQ=255)                                          ccAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTc                                                                                                         <  5:127861/149‑1 (MQ=255)                                          ccAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTc                                                                                                         <  5:234529/149‑1 (MQ=255)                                          ccAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTAGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTc                                                                                                         >  3:1428/1‑149 (MQ=255)                                               cAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCaa                                                                                                    >  1:56384/1‑149 (MQ=255)                                                    tGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGcc                                                                                                >  2:70528/1‑148 (MQ=255)                                                      ccTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGa                                                                                                                                   >  4:270773/1‑112 (MQ=255)                                                      ccTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGa                                                                                                                                   <  3:270773/112‑1 (MQ=255)                                                      ccTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCaa                                                                                              >  3:115282/1‑148 (MQ=255)                                                                  gTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTg                                                                                 >  2:174374/1‑149 (MQ=255)                                                                     ctacCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTc                                                                               <  4:342276/148‑1 (MQ=255)                                                                        cccACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTg                                                                           <  4:1428/149‑1 (MQ=255)                                                                        cccACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTg                                                                           >  2:169958/1‑149 (MQ=255)                                                                        cccACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTg                                                                           >  6:26338/1‑149 (MQ=255)                                                                           aCTGGGAAGCCATCCTCAAGGTTATGGTGCCCTCGGCTGATACCGTCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCTTGGACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTc                                                                        <  8:264977/149‑1 (MQ=255)                                                                               ggAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCAc                                                                    >  1:370543/1‑149 (MQ=255)                                                                                       tCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAac                                                            <  2:238700/149‑1 (MQ=255)                                                                                          tCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACAcc                                                         >  4:236897/1‑149 (MQ=255)                                                                                              ggTGCTGGTGCCCTCGTCGGCTACCGTCATCTTCTGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCTTTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTgg                                                     <  5:70098/149‑1 (MQ=255)                                                                                                tGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGTCCATGCT‑GGTCGCCACCGCCAACACCAATTCCCTGTCCTTGTTCGCACCGGACAACACCCTggcg                                                   >  5:375530/1‑149 (MQ=255)                                                                                                  aTGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTggcggc                                                 <  2:56384/149‑1 (MQ=255)                                                                                                     gTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAAACATTGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCgct                                              >  6:168986/1‑149 (MQ=255)                                                                                                         ccTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGctgctg                                          >  1:85675/1‑149 (MQ=255)                                                                                                          cTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTgg                                         <  5:26338/149‑1 (MQ=255)                                                                                                                 gcTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGaa                                  <  1:70528/149‑1 (MQ=255)                                                                                                                  cTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAAc                                 <  4:115282/149‑1 (MQ=255)                                                                                                                      cGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTcc                             >  6:285456/1‑149 (MQ=255)                                                                                                                        gCATCTTCGGTTCGCTGGTGCTTGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCg                           <  4:286731/149‑1 (MQ=255)                                                                                                                                  ttCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGcc                 <  2:370543/149‑1 (MQ=255)                                                                                                                                       tGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAAc            >  8:2537/1‑149 (MQ=255)                                                                                                                                         gTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAAc            <  7:2537/147‑1 (MQ=255)                                                                                                                                             tgggcctgggccGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAACGAGGTc      >  7:128357/1‑149 (MQ=255)                                                                                                                                             tgggcctgggccGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAACGAGGTc      >  8:51741/1‑149 (MQ=255)                                                                                                                                              gggcctgggccGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTccc                            <  5:126004/126‑1 (MQ=255)                                                                                                                                              gggcctgggccGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGAGGCGCTGCTGGCGCTGAACTTccc                            >  6:126004/1‑126 (MQ=255)                                                                                                                                               ggcctgggccGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAACGAGGTc      <  3:236897/147‑1 (MQ=255)                                                                                                                                               ggcctgggccGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAACGAGGTCg     >  8:152659/1‑148 (MQ=255)                                                                                                                                                  ctgggccGTGCACTCGGTGAAACCATGGCGCTGGCCATGCTGGGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAACGAGGTCGAAg  >  1:70566/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GGCGGTTTCCCAGGATGCGCTGACCAGCGTACCTATGAAAACCAAGCAGGCTGCCTACGGCATGGGTACTACCCACTGGGAAGCCATCCTCAAGGTGATGGTGCCCTCGGCGGCTACCGGCATCTTCGGTTCGCTGGTGCTGGGCCTGGGCCGTGCACTCGGTGAAACCATGGCGCTGGCCATGCT‑GGTCGGCAACGCCAACACCATTTCCCTGTCCTTGTTCGCACCGGCCAACACCCTGGCGGCGCTGCTGGCGCTGAACTTCCCGGAAGCCGGCCCGAACGAGGTCGAAG  >  NC_002947/3045034‑3045326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.