New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3077686 =	46 (0.780)	3 (0.050)	3/246	NT	5.9%	coding (167/951 nt)	PP_2687	hypothetical protein
	?	NC_002947	3077751 =	51 (0.910)					coding (102/951 nt)	PP_2687	hypothetical protein

GTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAG  >  NC_002947/3077539‑3077828                                                                                                                                                    |                                                                                                                                               caaggcggcggtaccaaggacacctgggtggtggaggactgagccatgctttcgcgaaccgcttccgacctgtactggatgtcccgctacctggagcgtgcagaaaaccttgcacgcatgctcgaggtcagctactcgctatcgctgAt                                                                                                                                               >  5:86955‑M1/148‑149 (MQ=255)  aaggcggcggtaccaaggacacctgggtggtggaggactgagccatgctttcgcgaaccgcttccgacctgtactggatgtcccgctacctggagcgtgcagaaaaccttgcacgcatgctcgaggtcagctactcgctatcgctgATg                                                                                                                                              <  6:311740‑M1/3‑1 (MQ=255)        ggCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAg                                                                                                                                        <  2:56782/149‑1 (MQ=255)        ggCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAg                                                                                                                                        <  2:185451/149‑1 (MQ=255)                    cATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCTAGTTCCTTGTGGCGACGCAGGTAGTGATCCAGCATGCGCGAGGCCATCAGCGa                                                                                                                             <  3:166437/148‑1 (MQ=255)                    cATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGa                                                                                                                             <  5:197393/148‑1 (MQ=255)                       gggCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACAtt                                                                                                                         >  4:23649/1‑149 (MQ=255)                               gTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTc                                                                                                                 >  6:324333/1‑149 (MQ=255)                                tCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGCGGCCATCAGCGACATTGCCAGTTCg                                                                                                                >  8:354687/1‑149 (MQ=255)                                            gcaggcagCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGtt                                                                                                                  <  1:143699/135‑1 (MQ=255)                                            gcaggcagCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGtt                                                                                                                  >  2:143699/1‑135 (MQ=255)                                                           tgctgcTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTgg                                                                                     <  1:166453/149‑1 (MQ=255)                                                             ctgctgGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTggg                                                                                    <  4:52419/148‑1 (MQ=255)                                                              tgctgGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTgggg                                                                                   >  6:274626/1‑148 (MQ=255)                                                                  cgacgtgtactggatgtcccgctacctggagcgtgcagaataccttgcacgcatgctcgaggtcagctactcgctatcgctgATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCa                                                                              >  3:113048‑M1/83‑149 (MQ=255)                                                                   gggTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCa                                                                              <  7:83128/148‑1 (MQ=255)                                                                   gggTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAg                                                                             >  8:344995/1‑149 (MQ=255)                                                                                 gAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGc                                                               >  5:156846/1‑149 (MQ=255)                                                                                    ccgctacctggagcgtgcagaaaaccttgcacgcatgctcgaggtcagctactcgctatcgctgATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGc                                                                                         <  6:320603‑M1/56‑1 (MQ=255)                                                                                    ccgctacctggaccgtgcagaaaaccttgcacgcatgctcgaggtcagctactcgctatcgctgATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGc                                                                                         >  5:320603‑M1/65‑120 (MQ=255)                                                                                     gCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGAc                                                           >  7:105469/1‑149 (MQ=255)                                                                                       gaagaaGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCt                                                         >  5:67218/1‑149 (MQ=255)                                                                                             gTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGACCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCa                                                   >  2:218437/1‑149 (MQ=255)                                                                                                  gcaTGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGt                                              <  3:148415/149‑1 (MQ=255)                                                                                                   caTGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTg                                             >  5:112043/1‑149 (MQ=255)                                                                                                   caTGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTg                                             <  5:324333/149‑1 (MQ=255)                                                                                                        gcTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAgg                                        >  6:363412/1‑149 (MQ=255)                                                                                                        gcTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAgg                                        >  1:14968/1‑149 (MQ=255)                                                                                                        gcTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGACCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAgg                                        <  1:218437/149‑1 (MQ=255)                                                                                                             ctgtCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGtttt                                    <  3:278177/147‑1 (MQ=255)                                                                                                              tgtCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGt                                              >  1:134536/1‑137 (MQ=255)                                                                                                              tgtCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGt                                              <  2:134536/137‑1 (MQ=255)                                                                                                                tCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGtttt                                    >  4:278177/1‑145 (MQ=255)                                                                                                                  gAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCa                               <  7:344995/148‑1 (MQ=255)                                                                                                                  gAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCAc                              >  1:353980/1‑149 (MQ=255)                                                                                                                         ttGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGt                                                                  >  1:68856/1‑106 (MQ=255)                                                                                                                         ttGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGt                                                                  <  2:68856/106‑1 (MQ=255)                                                                                                                         ttGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAg                       >  2:218698/1‑149 (MQ=255)                                                                                                                            tgGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGt                     <  7:276964/148‑1 (MQ=255)                                                                                                                               cGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCg                 <  3:156414/149‑1 (MQ=255)                                                                                                                                 aCGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCggg               <  2:14968/149‑1 (MQ=255)                                                                                                                                  cGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGa              >  5:270637/1‑149 (MQ=255)                                                                                                                                    cAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACa            <  7:354687/149‑1 (MQ=255)                                                                                                                                     aGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACAt           >  2:262910/1‑149 (MQ=255)                                                                                                                                      ggTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACATc          >  3:303093/1‑149 (MQ=255)                                                                                                                                      ggTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACATc          <  3:23649/149‑1 (MQ=255)                                                                                                                                           tCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGt      >  2:134550/1‑148 (MQ=255)                                                                                                                                             aTCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTa     >  4:103895/1‑147 (MQ=255)                                                                                                                                             aTCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACa   <  3:162378/149‑1 (MQ=255)                                                                                                                                              tCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAg  <  5:363412/149‑1 (MQ=255)                                                                                                                                              tCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTACTGCCCCGTCCAGGTAGCGGGACATCCAGTACAg  >  3:12697/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                               GTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAGCGAGTAGCTGACCTCGAGCATGCGTGCAAGGTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAG  >  NC_002947/3077539‑3077828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.