New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3387771	42 (0.710)	3 (0.050)	3/242	NT	6.9%	coding (552/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 3387797	42 (0.760)					coding (578/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase

AACGTGGGTTCAGTGGTGGGTTTTGCGCCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAGTTGGTAACCATCCCGCCACTTCATGTTGCC  >  NC_002947/3387628‑3387915                                                                                                                                                |                                                                                                                                                 aaCGTGGGTTCAGTGGTGGGTTTTGCGCCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGAc                                                                                                                                             <  5:173806/149‑1 (MQ=255)                gtggGTTTTGCGCCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTg                                                                                                                              >  5:66824/1‑149 (MQ=255)                 tggGTTTTGCGCCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTgg                                                                                                                             <  1:342608/149‑1 (MQ=255)                           gcCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAcgcgcccagatctcggtgcgggtcgctgccg                                                                                                                   <  3:126245‑M1/149‑32 (MQ=255)                           gcCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGtgccg                                                                                                                   >  8:85697‑M2/1‑144 (MQ=255)                           gcCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGtgccg                                                                                                                   <  7:41213‑M2/149‑6 (MQ=255)                           gcCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCAGCACCGAGATCTGGGCGCGtgccg                                                                                                                   <  5:183443‑M2/149‑6 (MQ=255)                             cggttttcggaaTGTCCATCTACGGCGCTTCCAAAGCCTTCGTGCTGTTTCTGTGACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAATCTGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGTCGCGtgccg                                                                                                                   >  6:192922‑M2/6‑142 (MQ=255)                             ccGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGtgccgga                                                                                                                 <  5:192922‑M2/149‑8 (MQ=255)                                aGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGTGCGCGTGCCGGCAtt                                                                                                              <  6:183443/149‑1 (MQ=255)                                     ggCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGt                                                                                                         >  4:361995/1‑149 (MQ=255)                                      gCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGa                                                                                                            <  4:42005/145‑1 (MQ=255)                                      gCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGa                                                                                                            >  3:42005/1‑145 (MQ=255)                                        aTGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCaa                                                                                                      <  5:359060/149‑1 (MQ=255)                                        aTGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCaa                                                                                                      >  6:290404/1‑149 (MQ=255)                                                         tACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAaca                                                                                                    >  3:1114/1‑134 (MQ=255)                                                         tACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAaca                                                                                                    <  4:1114/134‑1 (MQ=255)                                                           ccAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATg                                                                                   >  4:278911/1‑149 (MQ=255)                                                            cAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATgg                                                                                  <  3:278911/149‑1 (MQ=255)                                                             aaaGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATg                                                                                   >  1:222709/1‑147 (MQ=255)                                                             aaaGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTACCGGCATTGACg                                                                                                          <  6:58397/124‑1 (MQ=255)                                                             aaaGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTACCGGCATTGACg                                                                                                          >  5:58397/1‑124 (MQ=255)                                                              aaGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAg                                                                                <  8:41213/149‑1 (MQ=255)                                                               aGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAgg                                                                               >  2:99717/1‑149 (MQ=255)                                                                  cTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCg                                                                            <  3:361995/149‑1 (MQ=255)                                                                   ttCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAcgcgcccagatctcggtgcgggtcgctgccggcagcaccgcttgc                                                                                                     <  7:343663‑M1/123‑46 (MQ=255)                                                                   ttCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAcgcgcccagatctcggtgcgggtcgctgccggcagcaccgcttgc                                                                                                     >  8:343663‑M1/1‑78 (MQ=255)                                                                       tGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAg                                                                       <  1:99717/149‑1 (MQ=255)                                                                            tttCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTg                                                                    <  6:66824/147‑1 (MQ=255)                                                                                  tCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGt                                                                  >  2:211191/1‑143 (MQ=255)                                                                                  tCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGt                                                                  <  1:211191/143‑1 (MQ=255)                                                                                  tCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGAt                                                              <  5:290404/147‑1 (MQ=255)                                                                                    acaGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAg                                                                       >  1:328017/1‑136 (MQ=255)                                                                                    acaGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAg                                                                       <  2:328017/136‑1 (MQ=255)                                                                                             gAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTc                                                                 <  3:154948/133‑1 (MQ=255)                                                                                             gAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTc                                                                 >  4:154948/1‑133 (MQ=255)                                                                                                tCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGAtgc                                                            >  3:246615/1‑135 (MQ=255)                                                                                                tCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGAtgc                                                            <  4:246615/135‑1 (MQ=255)                                                                                                tCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCg                                                 <  2:9066/146‑1 (MQ=255)                                                                                                tCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCg                                                 >  1:9066/1‑146 (MQ=255)                                                                                                       cTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCg                                       >  5:127242/1‑149 (MQ=255)                                                                                                         gTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTc                                     >  2:126389/1‑149 (MQ=255)                                                                                                          tCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTcg                                    >  7:18540/1‑149 (MQ=255)                                                                                                           cACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTcgc                                   >  7:130263/1‑149 (MQ=255)                                                                                                             cccAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGa                                 <  6:127242/149‑1 (MQ=255)                                                                                                              ccAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAg                                >  5:253844/1‑149 (MQ=255)                                                                                                                     cGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAGTTGGTaa                         <  8:130263/149‑1 (MQ=255)                                                                                                                         tACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGt                                                                                       <  4:134446/83‑1 (MQ=255)                                                                                                                         tACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGt                                                                                       >  3:134446/1‑83 (MQ=255)                                                                                                                              gaaaGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAGTTGGTAACCATCCCGc                >  7:176462/3‑149 (MQ=255)                                                                                                                              gCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGtgccggcagcaccgcttgcacgtacacgcccttgggtgacagctcctgactcagcccctgtgacagaaacagcacgaa                                          <  7:343663‑M2/123‑79 (MQ=255)                                                                                                                              gCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGtgccggcagcaccgcttgcacgtacacgcccttgggtgacagctcctgactcagcccctgtgacagaaacagcacgaa                                          >  8:343663‑M2/1‑45 (MQ=255)                                                                                                                                     gTGCTGCCGGCAGCGACCCGCACAGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGTGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAGTTGGTAACCATCCCGCCACTTCa         <  8:231628/149‑1 (MQ=255)                                                                                                                                          tccgGCAcgcgcccagatctcggtgcgggtcgctgccggcagcaccgcttgcacgtacacgcccttgggtgacagctcctgactcagcccctgtgacagaaacagcacgaaggctttggtagcgccgtagatggacatgccgaactcgg    <  5:192922‑M1/148‑143 (MQ=255)                                                                                                                                            cGGCAcgcgcccagatctcggtgctggtcgctgccggcagcaccgcttgcacgtacacgcccttgggtgacagctcctgactcagcccctgtgacagaaacagcacgaaggctttggtagcgccgtagatggacatgccgaactcgggc  <  5:183443‑M1/149‑145 (MQ=255)                                                                                                                                            cGGCAcgcgcccagatctcggtgcgggtcgctgccggcagcaccgcttgcacgtacacgcccttgggtgacagctcctgactcagcccctgtgacagaaacagcacgaaggctttggtagcgccgtagatggacatgccgaactcgggc  <  7:41213‑M1/149‑145 (MQ=255)                                                                                                                                            cGGCAcgcgcccagatctcggtgcgggtcgctgccggcagcaccgcttgcacgtacacgcccttgggtgacagctcctgactcagcccctgtgacagaaacagcacgaaggctttggtagcgccgtagatggacatgccgaactcgggc  >  8:85697‑M1/1‑5 (MQ=255)                                                                                                                                            cGGCAcgcgaccagatctcggtgcgggtcgctgccggcagcacagattgcacgtacacgcccttgggtgacagctcctgactcagcccctgtcacagaaacagcacgaaggctttggaagcgccgtagatggacattccgaaaaccg    >  6:192922‑M1/1‑5 (MQ=255)                                                                                                                                            cGGCAGCGACCCGCACCGAGATCTGGGCGCGtgccggcagcaccgcttgcacgtacacgcccttgggtgacagctcctgactcagcccctgtgacagaaacagcacgaaggctttggtagcgccgtagatggacatgccgaactcgggc  <  3:126245‑M2/149‑119 (MQ=255)                                                                                                                                                |                                                                                                                                                 AACGTGGGTTCAGTGGTGGGTTTTGCGCCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAGTTGGTAACCATCCCGCCACTTCATGTTGCC  >  NC_002947/3387628‑3387915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.