New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3405864 =	37 (0.630)	4 (0.070)	3/246	NT	9.8%	coding (311/501 nt)	ogt	O6‑methylguanine‑DNA methyltransferase
	?	NC_002947	3405908 =	38 (0.680)					coding (355/501 nt)	ogt	O6‑methylguanine‑DNA methyltransferase

CTCGCCAGCTGGGTGAGTACTTTGACGGCAAGCGCCAGCGTTTCGAGCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTAT  >  NC_002947/3405717‑3406009                                                                                                                                                    |                                                                                                                                                  ttacaggtccagcgcccggctttgccgcccttccagcgccaacagatactgcttggccgccaggccaccggcaacgccggtcaggctgcccgcagcgccgattacccggtgacagggagcaacgatcgaaatccggttacggccattgg                                                                                                                                                  <  5:70792‑M1/2‑1 (MQ=255)  tCGCCAGCTGGGTGAGTACTTTGACGGCAAGCGCCAGCGTTTCGAGCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACgg                                                                                                                                                  >  5:175910/1‑148 (MQ=255)          tGGGTGAGTACTTTGACGGCAAGCGCCAGCGTTTCGAGCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGc                                                                                                                                         <  4:324998/149‑1 (MQ=255)          cagcgccaggctttgccgcccttccagcgccaacagatactgcttggccgccaggccaccggcaaagccggtcaggctgcccgacgcgccgattacccggtgacagggagcaacgatcgaaatcgggttgcggccattGGCAGCTCgg                                                                                                                                          <  5:145683‑M1/10‑1 (MQ=255)            ggTGAGTACTTTGACGGCAAGCGCCAGCGTTTCGAGCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGc                                                                                                                                         <  6:175910/147‑1 (MQ=255)                         aCGGCAAGCGCCAGCGTTTCGAGCTGGCGCTGGACTTTGCCGGAACTGACTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTAGGCGAAACCCGCAGCTACAGCGACAATGCACGGCAGCTCGGCAACCCCAGGGAGGTa                                                                                                                          >  3:132996/1‑149 (MQ=255)                                  gcCAGCGTTTCGAGCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGtt                                                                                                                 >  5:238225/1‑149 (MQ=255)                                        gTTTCGAGCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCt                                                                                                           <  4:120260/149‑1 (MQ=255)                                         aacagatactgcttggccgccaggccaccggcaaagccggtcaggctgcccgacgcgccgattacccggtgacagggagcaacgatcgaaatcgggttgcggccattGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTg                                                                                                          >  2:114545‑M1/108‑149 (MQ=255)                                               tactgcttggccgccaggccaccggcaaagccggtcaggctgcccgacgcgccgattacccggtgacagggagcaacgatcgaaatcgggttgcggccattGGCATCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATg                                                                                                    >  6:145683‑M1/102‑149 (MQ=255)                                                     gcTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCa                                                                                                                                  >  8:336302/1‑113 (MQ=255)                                                     gcTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCa                                                                                                                                  <  7:336302/113‑1 (MQ=255)                                                     gcTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGc                                                                                               >  1:100746/1‑148 (MQ=255)                                                        gccgccaggccaccggcaaagccggtcaggctgcccgacgcgccgattacccggtgacagggagcaacgatcgaaatcgggttgcggccattGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATg                                                                                                    >  2:204019‑M1/93‑140 (MQ=255)                                                        gccgccaggccaccggcaaagccggtcaggctgcccgacgcgccgattacccggtgacagggagcaacgatcgaaatcgggttgcggccattGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATg                                                                                                    <  1:204019‑M1/48‑1 (MQ=255)                                                              tGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGAtt                                                                                      <  2:100746/148‑1 (MQ=255)                                                                     aCTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGt                                                                              >  1:58164/1‑149 (MQ=255)                                                                      cTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTg                                                                                                                >  4:357420/1‑114 (MQ=255)                                                                      cTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTg                                                                                                                <  3:357420/114‑1 (MQ=255)                                                                      cTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCg                                                                                   >  6:168806/1‑143 (MQ=255)                                                                      cTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCg                                                                                   <  5:168806/143‑1 (MQ=255)                                                                       tGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTg                                                                            >  6:277216/1‑149 (MQ=255)                                                                         aGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCAATCGTTGCt                                                                          <  6:238225/149‑1 (MQ=255)                                                                           ttCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTcc                                                                        >  2:202187/1‑149 (MQ=255)                                                                           ttCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTcc                                                                        <  2:58164/149‑1 (MQ=255)                                                                           ttCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCAAATGGCCGCAACCCGATTTCGATCGTTGCTcc                                                                        <  7:136735/149‑1 (MQ=255)                                                                                    cAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCg                                                               >  3:34737/1‑149 (MQ=255)                                                                                      ggTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCt                                                                      <  4:266904/140‑1 (MQ=255)                                                                                      ggTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCt                                                                      >  3:266904/1‑140 (MQ=255)                                                                                        tgtgGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGt                                                            >  7:59161/1‑148 (MQ=255)                                                                                              ccGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGgc                                                     <  4:34737/149‑1 (MQ=255)                                                                                              ccGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGgc                                                     >  1:269292/1‑149 (MQ=255)                                                                                                      cTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCggg                                             <  5:277216/149‑1 (MQ=255)                                                                                                       tGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCggg                                             >  3:130337/1‑148 (MQ=255)                                                                                                                      gCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGc                                         >  2:245144/1‑137 (MQ=255)                                                                                                                      gCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGc                                         <  1:245144/137‑1 (MQ=255)                                                                                                                      gCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCttt                             <  1:202187/149‑1 (MQ=255)                                                                                                                          aaCCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCg                         <  2:269292/149‑1 (MQ=255)                                                                                                                             ccGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTg                      >  2:332614/1‑149 (MQ=255)                                                                                                                              cGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGCCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTgg                     >  3:206013/1‑149 (MQ=255)                                                                                                                                       aGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTggcggc            >  4:60188/1‑149 (MQ=255)                                                                                                                                       aGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTggcg              >  4:168259/1‑147 (MQ=255)                                                                                                                                       aGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTggcg              <  3:168259/147‑1 (MQ=255)                                                                                                                                          gACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCaa         <  1:332614/149‑1 (MQ=255)                                                                                                                                                gCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTa   >  8:277779/1‑149 (MQ=255)                                                                                                                                                 cACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTAt  <  8:59161/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CTCGCCAGCTGGGTGAGTACTTTGACGGCAAGCGCCAGCGTTTCGAGCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTAT  >  NC_002947/3405717‑3406009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.