New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3405864 =	37 (0.630)	4 (0.070)	3/246	NT	9.8%	coding (311/501 nt)	ogt	O6‑methylguanine‑DNA methyltransferase
	?	NC_002947	3405908 =	38 (0.680)					coding (355/501 nt)	ogt	O6‑methylguanine‑DNA methyltransferase

GCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGGGCGGCAAAGCCTGGCGCTGGACCTGTAAGG  >  NC_002947/3405763‑3406056                                                                                                                                                  |                                                                                                                                                     tactgcttggccgccaggccaccggcaaagccggtcaggctgcccgacgcgccgattacccggtgacagggagcaacgatcgaaatcgggttgcggccattGGCATCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATg                                                                                                                                                   >  6:145683‑M1/102‑149 (MQ=255)       gcTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGc                                                                                                                                              >  1:100746/1‑148 (MQ=255)          gccgccaggccaccggcaaagccggtcaggctgcccgacgcgccgattacccggtgacagggagcaacgatcgaaatcgggttgcggccattGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATg                                                                                                                                                   >  2:204019‑M1/93‑140 (MQ=255)          gccgccaggccaccggcaaagccggtcaggctgcccgacgcgccgattacccggtgacagggagcaacgatcgaaatcgggttgcggccattGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATg                                                                                                                                                   <  1:204019‑M1/48‑1 (MQ=255)                tGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGAtt                                                                                                                                     <  2:100746/148‑1 (MQ=255)                       aCTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGt                                                                                                                             >  1:58164/1‑149 (MQ=255)                        cTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCg                                                                                                                                  >  6:168806/1‑143 (MQ=255)                        cTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCg                                                                                                                                  <  5:168806/143‑1 (MQ=255)                         tGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTg                                                                                                                           >  6:277216/1‑149 (MQ=255)                           aGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCAATCGTTGCt                                                                                                                         <  6:238225/149‑1 (MQ=255)                             ttCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTcc                                                                                                                       <  2:58164/149‑1 (MQ=255)                             ttCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTcc                                                                                                                       >  2:202187/1‑149 (MQ=255)                             ttCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCAAATGGCCGCAACCCGATTTCGATCGTTGCTcc                                                                                                                       <  7:136735/149‑1 (MQ=255)                                      cAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCg                                                                                                              >  3:34737/1‑149 (MQ=255)                                        ggTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCt                                                                                                                     >  3:266904/1‑140 (MQ=255)                                        ggTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCt                                                                                                                     <  4:266904/140‑1 (MQ=255)                                          tgtgGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGt                                                                                                           >  7:59161/1‑148 (MQ=255)                                                ccGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGgc                                                                                                    <  4:34737/149‑1 (MQ=255)                                                ccGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGgc                                                                                                    >  1:269292/1‑149 (MQ=255)                                                        cTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCggg                                                                                            <  5:277216/149‑1 (MQ=255)                                                         tGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCggg                                                                                            >  3:130337/1‑148 (MQ=255)                                                                        gCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGc                                                                                        <  1:245144/137‑1 (MQ=255)                                                                        gCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGc                                                                                        >  2:245144/1‑137 (MQ=255)                                                                        gCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCttt                                                                            <  1:202187/149‑1 (MQ=255)                                                                            aaCCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCg                                                                        <  2:269292/149‑1 (MQ=255)                                                                               ccGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTg                                                                     >  2:332614/1‑149 (MQ=255)                                                                                cGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGCCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTgg                                                                    >  3:206013/1‑149 (MQ=255)                                                                                         aGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTggcggc                                                           >  4:60188/1‑149 (MQ=255)                                                                                         aGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTggcg                                                             <  3:168259/147‑1 (MQ=255)                                                                                         aGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTggcg                                                             >  4:168259/1‑147 (MQ=255)                                                                                            gACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCaa                                                        <  1:332614/149‑1 (MQ=255)                                                                                                  gCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTa                                                  >  8:277779/1‑149 (MQ=255)                                                                                                  cattggcagcgccaaccgcgcgtaccgccctggggttgccgagctgccAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTggcggc                                                           >  2:204019‑M2/49‑140 (MQ=255)                                                                                                  cattggcagcgccaaccgcgcgtaccgccctggggttgccgagctgccAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTggcggc                                                           <  1:204019‑M2/92‑1 (MQ=255)                                                                                                  cattggcagcgccaaccgcgcgtaccgccctggggttgccgagatgccAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTa                                                  >  6:145683‑M2/49‑149 (MQ=255)                                                                                                   cACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTAt                                                 <  8:59161/149‑1 (MQ=255)                                                                                                        cagcgccaaccgcgcgtaccgccctggggttgccgagctgccAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGtt                                            >  2:114545‑M2/43‑149 (MQ=255)                                                                                                            tCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCt                                                                 >  4:30572/1‑124 (MQ=255)                                                                                                            tCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCt                                                                 <  3:30572/124‑1 (MQ=255)                                                                                                            tCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGgcg                                        >  1:134060/1‑149 (MQ=255)                                                                                                                     ccAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAggg                               >  2:343684/1‑149 (MQ=255)                                                                                                                      cAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGggc                              >  6:21832/1‑149 (MQ=255)                                                                                                                         ggCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGCCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGggcggc                           <  4:206013/149‑1 (MQ=255)                                                                                                                             gTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGATGGGCGGCAAAg                       >  1:229429/1‑149 (MQ=255)                                                                                                                                   gcgGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGGGCGGCAAAGCCTGgc                 >  4:306861/1‑149 (MQ=255)                                                                                                                                        ccgagctgccAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGGGCGGCAAAGCCTGGCGCTg             <  5:145683‑M2/138‑1 (MQ=255)                                                                                                                                          gcgcTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGGGCGGCAAAGCCTGGCGCTGGAc          <  3:306861/149‑1 (MQ=255)                                                                                                                                                ccAATGGCCGTAACCGGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCTGCGGGCAGCCTGACCGGCGTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGGGCGGCAAAGCCGGGCGCTGGACCTGTaa    <  5:70792‑M2/147‑1 (MQ=255)                                                                                                                                                  aaTGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGaa                                  >  2:194394/1‑117 (MQ=255)                                                                                                                                                  aaTGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGaa                                  <  1:194394/117‑1 (MQ=255)                                                                                                                                                  aaTGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGGGCGGCAAAGCCTGGCGCTGGACCTGTAAgg  <  1:114545/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GCTGGCGCTGGACTTTGCCGGTACTGAGTTCCAGCGCCAGGTGTGGGCCGCATTGCTGGCGATACCGTTCGGCGAAACCCGCAGCTACAGCGACATTGCACGGCAGCTCGGCAACCCCAGGGCGGTACGCGCGGTTGGCGCTGCCAATGGCCGCAACCCGATTTCGATCGTTGCTCCCTGTCACCGGGTAATCGGCGCGTCGGGCAGCCTGACCGGCTTTGCCGGTGGCCTGGCGGCCAAGCAGTATCTGTTGGCGCTGGAAGGGCGGCAAAGCCTGGCGCTGGACCTGTAAGG  >  NC_002947/3405763‑3406056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.