New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3561306 =	41 (0.700)	3 (0.050)	3/250	NT	6.7%	coding (1061/1377 nt)	tdcG‑III	L‑serine dehydratase
	?	NC_002947	3561326 =	44 (0.770)					coding (1081/1377 nt)	tdcG‑III	L‑serine dehydratase

ATGAAGTTCAACCCCAATGCCTGCGATGCTGATGTGGTGGACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGCCGTGCATCGAGCGCAATGCGATTG  >  NC_002947/3561158‑3561452                                                                                                                                                           |                                                                                                                                                   aTGAAGTTCAACCCCAATGCCTGCGATGCTGATGTGGTGGACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑gc                                                                                                                                                    >  1:148185/1‑149 (MQ=255)       ttCAACCCCAATGCCTGCGATGCTGATGTGGTGGACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCtgctgc                                                                                                                                              >  3:291528/1‑149 (MQ=255)           gatcgccttgaccgcagcaatcgcattgcgctcgatgcacggcacctgcaccaggccgcccaccgggtcgcaggtcagcccaaggttgtgctccagggcaatttcggcggcgttttcaagctggggcggcgtagcgcccagtacctgc                                                                                                                                                 >  4:222167‑M1/145‑148 (MQ=255)                      tGCGATGCTGATGTGGTGGACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAgg                                                                                                                                >  4:93798/1‑148 (MQ=255)                                 tgtgGTGGACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTa                                                                                                                    >  6:374670/1‑149 (MQ=255)                                   tggtggACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TGAGCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTa                                                                                                                    <  1:50036/148‑1 (MQ=255)                                   tggtggACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTAc                                                                                                                   <  4:291528/148‑1 (MQ=255)                                     gtggACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTAcgcc                                                                                                                >  3:97409/1‑149 (MQ=255)                                      tggACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTAcgccg                                                                                                               <  6:306845/149‑1 (MQ=255)                                       ggACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTAcgccgc                                                                                                              >  7:96002/1‑149 (MQ=255)                                           ttCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGccc                                                                                                            >  8:308037/1‑147 (MQ=255)                                           ttCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGccc                                                                                                            >  6:55791/1‑147 (MQ=255)                                           ttCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGccc                                                                                                            >  2:124076/1‑147 (MQ=255)                                             ccTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAg                                                                                                         <  8:96002/148‑1 (MQ=255)                                             ccTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGc                                                                                                        >  6:306181/1‑149 (MQ=255)                                              cTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCt                                                                                                       >  2:190026/1‑149 (MQ=255)                                              cTGCGTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGGGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGc                                                                                                        <  7:69613/148‑1 (MQ=255)                                                gCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCtt                                                                                                      >  5:200341/1‑148 (MQ=255)                                                 cTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCtt                                                                                                      <  2:32907/147‑1 (MQ=255)                                                 cTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGAAGGTACTGGGCGCTACGCCGCCCCAGCtt                                                                                                      <  1:216893/147‑1 (MQ=255)                                                     gcgcAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAAc                                                                                                <  5:306181/149‑1 (MQ=255)                                                                          tgtgCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCATGGAg                                                                           >  3:246804/1‑149 (MQ=255)                                                                                      aCGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTggg                                                               <  1:190026/149‑1 (MQ=255)                                                                                      aCGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTgg                                                                <  3:93798/148‑1 (MQ=255)                                                                                        gCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTa                                                                                                                    <  4:167161/94‑1 (MQ=255)                                                                                        gCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTa                                                                                                                    >  3:167161/1‑94 (MQ=255)                                                                                          cTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCGGAAATTGCCCTGGAGCACAACCTTGGGCTGa                                                           >  3:278545/1‑149 (MQ=255)                                                                                          cTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAACTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGa                                                           >  5:87525/1‑149 (MQ=255)                                                                                             gATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCt                                                        >  7:266356/1‑149 (MQ=255)                                                                                                ttCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGc                                                      <  6:346504/148‑1 (MQ=255)                                                                                                      cgCCGAGGTGGGTGGTCTGGGGGTGGTGGGCGGGGCCGGTTCTCGACCCCA‑GGTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAATTTGCCCTGGAGCACAACCTTGGGCTGACCTGCGa                                                    <  1:124076/148‑1 (MQ=255)                                                                                                         cGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTgg                                            <  5:374670/149‑1 (MQ=255)                                                                                                           aGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGggc                                          <  8:266356/149‑1 (MQ=255)                                                                                                              tGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGggcggc                                       <  4:97409/149‑1 (MQ=255)                                                                                                                       aGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAg                              <  7:308037/149‑1 (MQ=255)                                                                                                                          gggAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTg                           >  3:207137/1‑149 (MQ=255)                                                                                                                            gAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGcc                         >  6:173186/1‑149 (MQ=255)                                                                                                                              ggTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGCCGt                       <  6:200341/149‑1 (MQ=255)                                                                                                                                    cTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGCCGTGCATc                  >  4:123793/1‑148 (MQ=255)                                                                                                                                     tCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGCCGTGCATc                  >  1:187913/1‑147 (MQ=255)                                                                                                                                          cTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTg                                    <  4:90506/124‑1 (MQ=255)                                                                                                                                          cTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTg                                    >  3:90506/1‑124 (MQ=255)                                                                                                                                           tGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGCCGTGCATCGAGCGCaa          >  2:353765/1‑149 (MQ=255)                                                                                                                                             gtagcgcccagtacCTGCGCCAGGCCGGCAGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGc                          <  1:358934‑M1/123‑1 (MQ=255)                                                                                                                                                   cccagtacCTGCGCCAGGCCGGCAGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGa                                                    >  6:314287‑M1/9‑105 (MQ=255)                                                                                                                                                   cccagtacCTGCGCCAGGCCGGCAGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGa                                                    <  5:314287‑M1/97‑1 (MQ=255)                                                                                                                                                       tG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAACTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGCCGTGCATCGAGCGCAATGCGAtt   <  6:87525/149‑1 (MQ=255)                                                                                                                                                          gctgctGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGCCGTGCATCGAGCGCAATGCGATtg  <  4:278545/148‑1 (MQ=255)                                                                                                                                                           |                                                                                                                                                   ATGAAGTTCAACCCCAATGCCTGCGATGCTGATGTGGTGGACTTCCTGCTTGGCGCAGCGGCGGTTGGCATCCTGTGCAAAAAGAACGCCTCGATTTCCGGTGCCGAGGTGGGTTGTCAGGGGGAGGTGGGCTCGGCCTGT‑‑TCGA‑‑‑TG‑GCTGCTGCCGGCCTGGCGCAGGTACTGGGCGCTACGCCGCCCCAGCTTGAAAACGCCGCCGAAATTGCCCTGGAGCACAACCTTGGGCTGACCTGCGACCCGGTGGGCGGCCTGGTGCAGGTGCCGTGCATCGAGCGCAATGCGATTG  >  NC_002947/3561158‑3561452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.