New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4094105 =	47 (0.800)	3 (0.050)	3/246	NT	6.1%	coding (1102/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
	?	NC_002947	4094144 =	48 (0.860)					coding (1141/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase

CCGACCTTGGCCAGTACCTGGACCAGCAAGCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGC  >  NC_002947/4093962‑4094251                                                                                                                                                 |                                                                                                                                                   ctccgcttcgccgatcagcgtcgcggtcagctggccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggtggtgggcccaaacacttcttcctgcaacagcgggtcggactcgaccagCAGgc                                                                                                                                                <  7:268362‑M1/5‑1 (MQ=255) ccGACCTTGGCCAGTACCTGGACCAGCAAGCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGgcg                                                                                                                                               >  4:197766/1‑149 (MQ=255)  cGACCTTGGCCAGTACCTGGACCAGCAAGCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGgcgc                                                                                                                                              >  3:308806/1‑149 (MQ=255)          gCCAGTACCTGGACCAGCAAGCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCa                                                                                                                                       <  6:109262/148‑1 (MQ=255)                   tGGACCAGCAAGCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAg                                                                                                                             >  3:337990/1‑149 (MQ=255)                     gACCAGCAAGCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAgg                                                                                                                            <  5:11617/148‑1 (MQ=255)                       ccAGCAAGCCGGGCAAACCATGCTCTATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCg                                                                                                                         <  4:29573/149‑1 (MQ=255)                           cAAGCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATg                                                                                                                      >  7:211941/1‑148 (MQ=255)                              gCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCaag                                                                                                                  >  7:351867/1‑147 (MQ=255)                               ccGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGGGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCTATGCACGc                                                                                                                 <  5:132616/149‑1 (MQ=255)                                     aaaCCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCctgctg                                                                                                           <  8:211941/149‑1 (MQ=255)                                       gcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggtggtgggcccaaacacttcttcctgcaacagcgggtcggactcgaccagCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTgg                                                                                                          >  3:267277‑M1/107‑149 (MQ=255)                                          aTGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGAt                                                                                                                       >  2:314822/1‑132 (MQ=255)                                          aTGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGAt                                                                                                                       <  1:314822/132‑1 (MQ=255)                                                aaTGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGa                                                                                                >  3:215782/1‑149 (MQ=255)                                                aaTGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGa                                                                                                <  7:203914/149‑1 (MQ=255)                                                 aTGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGAc                                                                                               >  8:89802/1‑149 (MQ=255)                                                 aTGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGAc                                                                                               <  4:215782/149‑1 (MQ=255)                                                          gattGCACAGCTACTTGGTCTGACTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTg                                                                                      <  8:351867/147‑1 (MQ=255)                                                            ttGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTg                                                                                      >  2:154802/1‑147 (MQ=255)                                                                     tACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAgt                                                                           >  8:180517/1‑149 (MQ=255)                                                                      aCGTCGGCGGCCTTGAACACTTGCATGCCCAATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAgt                                                                           >  1:38918/1‑149 (MQ=255)                                                                          cggcggCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTg                                                                      <  4:308806/149‑1 (MQ=255)                                                                            gcggcCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTggg                                                                    <  6:332666/149‑1 (MQ=255)                                                                               gcCTTGAACACTTGCATGCCG‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGccc                                                                 <  4:337990/149‑1 (MQ=255)                                                                                 cTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTc                                                                                                        <  6:195909/108‑1 (MQ=255)                                                                                 cTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTc                                                                                                        >  5:195909/1‑108 (MQ=255)                                                                                  ctctacggccacggtggtgggcccaaacacttcttcctgcaacagcgggtcggactcgaccagCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCct                                                                                                               >  4:150669‑M1/64‑101 (MQ=255)                                                                                  ctctacggccacggtggtgggcccaaacacttcttcctgcaacagcgggtcggactcgaccagCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCct                                                                                                               <  3:150669‑M1/38‑1 (MQ=255)                                                                                    gAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCcaccac                                                            >  4:200906/1‑149 (MQ=255)                                                                                          ttGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGttt                                                                       >  3:81209/1‑132 (MQ=255)                                                                                          ttGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGttt                                                                       <  4:81209/132‑1 (MQ=255)                                                                                                gccc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTa                                                  <  8:167937/147‑1 (MQ=255)                                                                                                gccc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTa                                                  >  7:167937/1‑147 (MQ=255)                                                                                                  cc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTg                                                                      <  3:36375/125‑1 (MQ=255)                                                                                                  cc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTg                                                                      >  4:36375/1‑125 (MQ=255)                                                                                                  cc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAgg                                              <  2:346195/149‑1 (MQ=255)                                                                                                   c‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGt                                             <  3:197766/149‑1 (MQ=255)                                                                                                     atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTg                                            <  2:38918/149‑1 (MQ=255)                                                                                                        ccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCa                                          <  1:154802/148‑1 (MQ=255)                                                                                                        ccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCa                                          <  7:89802/148‑1 (MQ=255)                                                                                                         cGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGa                                                                                                >  5:83523/1‑93 (MQ=255)                                                                                                         cGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGa                                                                                                <  6:83523/93‑1 (MQ=255)                                                                                                              tCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACaa                                    <  3:200906/148‑1 (MQ=255)                                                                                                               cGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGt                                                         <  7:289023/126‑1 (MQ=255)                                                                                                               cGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGt                                                         >  8:289023/1‑126 (MQ=255)                                                                                                                     tgtgGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAAc                            >  5:50487/1‑149 (MQ=255)                                                                                                                       tgGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTg                          >  3:255853/1‑149 (MQ=255)                                                                                                                                 ggTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACgcgc                <  4:255853/149‑1 (MQ=255)                                                                                                                                        gAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCgg         >  3:238525/1‑149 (MQ=255)                                                                                                                                        gAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCgg         >  6:192609/1‑149 (MQ=255)                                                                                                                                              aaCCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTgcg   >  8:268362/1‑149 (MQ=255)                                                                                                                                               aCCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTgcgc  >  8:81336/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                   CCGACCTTGGCCAGTACCTGGACCAGCAAGCCGGGCAAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGC  >  NC_002947/4093962‑4094251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.