New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4094105 =	47 (0.800)	3 (0.050)	3/246	NT	6.1%	coding (1102/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
	?	NC_002947	4094144 =	48 (0.860)					coding (1141/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase

AAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAG  >  NC_002947/4093998‑4094287                                                                                                                                                    |                                                                                                                                                aaaCCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCctgctg                                                                                                                                               <  8:211941/149‑1 (MQ=255)   gcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggtggtgggcccaaacacttcttcctgcaacagcgggtcggactcgaccagCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTgg                                                                                                                                              >  3:267277‑M1/107‑149 (MQ=255)            aaTGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGa                                                                                                                                    <  7:203914/149‑1 (MQ=255)            aaTGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGa                                                                                                                                    >  3:215782/1‑149 (MQ=255)             aTGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGAc                                                                                                                                   >  8:89802/1‑149 (MQ=255)             aTGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGAc                                                                                                                                   <  4:215782/149‑1 (MQ=255)                      gattGCACAGCTACTTGGTCTGACTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTg                                                                                                                          <  8:351867/147‑1 (MQ=255)                        ttGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTg                                                                                                                          >  2:154802/1‑147 (MQ=255)                                 tACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAgt                                                                                                               >  8:180517/1‑149 (MQ=255)                                  aCGTCGGCGGCCTTGAACACTTGCATGCCCAATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAgt                                                                                                               >  1:38918/1‑149 (MQ=255)                                      cggcggCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTg                                                                                                          <  4:308806/149‑1 (MQ=255)                                        gcggcCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTggg                                                                                                        <  6:332666/149‑1 (MQ=255)                                           gcCTTGAACACTTGCATGCCG‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGccc                                                                                                     <  4:337990/149‑1 (MQ=255)                                             cTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTc                                                                                                                                            >  5:195909/1‑108 (MQ=255)                                             cTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTc                                                                                                                                            <  6:195909/108‑1 (MQ=255)                                                gAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCcaccac                                                                                                >  4:200906/1‑149 (MQ=255)                                                      ttGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGttt                                                                                                           >  3:81209/1‑132 (MQ=255)                                                      ttGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGttt                                                                                                           <  4:81209/132‑1 (MQ=255)                                                            gccc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTa                                                                                      >  7:167937/1‑147 (MQ=255)                                                            gccc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTa                                                                                      <  8:167937/147‑1 (MQ=255)                                                              cc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTg                                                                                                          <  3:36375/125‑1 (MQ=255)                                                              cc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTg                                                                                                          >  4:36375/1‑125 (MQ=255)                                                              cc‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAgg                                                                                  <  2:346195/149‑1 (MQ=255)                                                               c‑atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGt                                                                                 <  3:197766/149‑1 (MQ=255)                                                                 atgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTg                                                                                <  2:38918/149‑1 (MQ=255)                                                                    ccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCa                                                                              <  1:154802/148‑1 (MQ=255)                                                                    ccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCa                                                                              <  7:89802/148‑1 (MQ=255)                                                                     cGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGa                                                                                                                                    <  6:83523/93‑1 (MQ=255)                                                                     cGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGa                                                                                                                                    >  5:83523/1‑93 (MQ=255)                                                                          tCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACaa                                                                        <  3:200906/148‑1 (MQ=255)                                                                           cGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGt                                                                                             >  8:289023/1‑126 (MQ=255)                                                                           cGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGt                                                                                             <  7:289023/126‑1 (MQ=255)                                                                                 tgtgGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAAc                                                                >  5:50487/1‑149 (MQ=255)                                                                                   tgGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTg                                                              >  3:255853/1‑149 (MQ=255)                                                                                             ggTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACgcgc                                                    <  4:255853/149‑1 (MQ=255)                                                                                                    gAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCgg                                             >  6:192609/1‑149 (MQ=255)                                                                                                    gAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCgg                                             >  3:238525/1‑149 (MQ=255)                                                                                                         ccagcaggcgtgcatcggccttgaacagctgagcgcgcgcctgCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTgc                                        >  3:267277‑M2/44‑149 (MQ=255)                                                                                                          aaCCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTgcg                                       >  8:268362/1‑149 (MQ=255)                                                                                                           aCCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTgcgc                                      >  8:81336/1‑149 (MQ=255)                                                                                                              aggcgtgcatcggccttgaacagctgagcgcgcgcctgCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTagag                                                                                   >  4:150669‑M2/39‑101 (MQ=255)                                                                                                              aggcgtgcatcggccttgaacagctgagcgcgcgcctgCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTagag                                                                                   <  3:150669‑M2/63‑1 (MQ=255)                                                                                                                        tCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACcg                         >  8:346172/1‑149 (MQ=255)                                                                                                                           gCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGa                      >  1:109647/1‑149 (MQ=255)                                                                                                                              gTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTg                                                                                            >  6:315387/1‑76 (MQ=255)                                                                                                                              gTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTg                                                                                            <  5:315387/76‑1 (MQ=255)                                                                                                                              gTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACg                    >  7:249938/1‑148 (MQ=255)                                                                                                                              gTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACg                    <  8:249938/148‑1 (MQ=255)                                                                                                                               ttCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCt                  >  3:157731/1‑149 (MQ=255)                                                                                                                                  aaGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCCCCACCGTGCCCGAAGAGGTGCAGGACAACGACCAACTGCGCGACGCCCTGCACGGCCTGCGCGGCCACCTGACCCCGACCCTGAt               >  6:189913/1‑149 (MQ=255)                                                                                                                                  aaGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGAt               <  7:180517/149‑1 (MQ=255)                                                                                                                                  aaGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGAt               >  3:97657/1‑149 (MQ=255)                                                                                                                                    ggCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAACGCGACGCTGATCg             >  7:162969/1‑149 (MQ=255)                                                                                                                                             aCGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCgg    <  5:233429/149‑1 (MQ=255)                                                                                                                                             aCGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCg     >  5:68626/1‑148 (MQ=255)                                                                                                                                               gcctgCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCggag  <  7:268362‑M2/144‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                AAACCATGCTCAATGCTGGCGGCTTGCACAGCTACGTCGGCGGCCTTGAACACTTGCATGCCC‑ATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAG  >  NC_002947/4093998‑4094287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.