New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5211621 =42 (0.710)4 (0.070) 4/250 NT 8.7% coding (329/1638 nt) PP_4592 metal dependent hydrolase
?NC_002947 5211652 = 43 (0.750)coding (298/1638 nt) PP_4592 metal dependent hydrolase

ACACAGGCACCACTGACCACCAACTTACCCAGCAGCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTG  >  NC_002947/5211474‑5211767
                                                                                                                                                   |                                                                                                                                                   
acacaGGCACCACTGACCACCAACTTACCCAGCAGCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTc                                                                                                                                                    >  8:94652/1‑149 (MQ=255)
       caccacTGACCACCAACTTACCCAGCAGCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAata                                                                                                                                             <  1:369753/149‑1 (MQ=255)
         ccacTGACCACCAACTTACCCAGCAGCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATAtt                                                                                                                                           <  5:335614/149‑1 (MQ=255)
         ccacTGACCACCAACTTACCCAGCAGCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATAtt                                                                                                                                           <  3:337786/149‑1 (MQ=255)
          cacTGACCACCAACTTACCCAGCAGCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTg                                                                                                                                          <  6:119436/149‑1 (MQ=255)
                 caccaACTTACCCAGCAGCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCgg                                                                                                                                   >  3:119797/1‑149 (MQ=255)
                          acacagcagCTCGCGCTCCCACGGGCGTTAGGCGATCTCAGCCTTCCACAGCAGCACCGATCGCAGCACACCCACAAGCAGGATAAACTCGGCAAACTAGAACCACATCAAGTCGCGCAACACCGCAATATTCGTCTCGGCCATATTAc                                                                                                                         >  8:192976/4‑149 (MQ=255)
                             cagcagCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGa                                                                                                                      <  4:119797/149‑1 (MQ=255)
                                  gttaattgccttccggtatgtagtgaagccggtacttatcgtgttgttcatgagtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgtTCCGCAATATTGGTCTCGGCCATATTACGGAACATg                                                                                                                 <  2:66996‑M1/36‑1 (MQ=255)
                                   cTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGc                                                                                                                >  2:352660/1‑149 (MQ=255)
                                       cgGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGc                                                                                                            <  7:192976/149‑1 (MQ=255)
                                          tGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGt                                                                                                          >  4:64217/1‑148 (MQ=255)
                                                      tAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATaa                                                                                                    >  1:89812/1‑142 (MQ=255)
                                                      tAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATaa                                                                                                    <  2:89812/142‑1 (MQ=255)
                                                      tAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGcc                                                                                             <  8:8027/149‑1 (MQ=255)
                                                                 cgcCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTgg                                                                                      <  6:141578/145‑1 (MQ=255)
                                                                  gcCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCAt                                                                                 <  7:94652/149‑1 (MQ=255)
                                                                  gcCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCAt                                                                                 <  8:146154/149‑1 (MQ=255)
                                                                  gcCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCAt                                                                                 <  4:368226/149‑1 (MQ=255)
                                                                       ccACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGaa                                                                              <  1:352660/147‑1 (MQ=255)
                                                                        cacaGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGt                                                                            >  6:135727/1‑148 (MQ=255)
                                                                         acaGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATaa                                                                                                    >  2:280872/1‑123 (MQ=255)
                                                                         acaGCAGCACCGATGGCAGCACACCCAGCAGCAGGAAATACTCGGCAAACTTGAACGACATCAAGTCGCTCACCTCCGCAATATTGGTATCGGCCATATTACGGAACATGCCGTCTTCAATAAGTACGCCGTAATGGTTCATGAAGt                                                                            >  2:306739/1‑147 (MQ=255)
                                                                             cagcaCCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCa                                                                      <  3:64217/149‑1 (MQ=255)
                                                                                       ggCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTGCATGAAGTCAGCCACGCCCgcgc                                                             >  6:282826/1‑148 (MQ=255)
                                                                                          agcaCACCCAGCAGCACCATATACGCGGAAAAATTGAACGACATAAAGTCGCGCACCTCCGCAAAATTGGTATCTCCCATAATACGGAACATTCCGGCTACAATAAGTACGCCGTACTGGATCATGAAGTAAGAAACGCCCGCGCCAc                                                          >  8:216286/1‑148 (MQ=255)
                                                                                              cacCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAAt                                                                                                      >  8:128208/1‑100 (MQ=255)
                                                                                              cacCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAAt                                                                                                      <  7:128208/100‑1 (MQ=255)
                                                                                               acCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTa                                                                                          >  4:279218/1‑111 (MQ=255)
                                                                                               acCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCa                                                                                  >  8:90063/1‑119 (MQ=255)
                                                                                               acCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATg                                                     >  6:132021/1‑148 (MQ=255)
                                                                                                 ccAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGaa                                                   >  1:157414/1‑148 (MQ=255)
                                                                                                 ccAGAAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGaa                                                   >  4:338285/1‑148 (MQ=255)
                                                                                                        cagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGa                                           <  5:132021/149‑1 (MQ=255)
                                                                                                         agGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt                                          <  8:212654/149‑1 (MQ=255)
                                                                                                           ttcatgaaccagtacggcgtacttattgacgccggcatgtTCCGCAATATTGGTCTCGGCCATATTACGGAAc                                                                                                                    <  6:139575‑M1/33‑1 (MQ=255)
                                                                                                           ttcatgaaccagtacggcgtacttattgacgccggcatgtTCCGCAATATTGGTCTCGGCCATATTACGGAAc                                                                                                                    >  5:139575‑M1/41‑73 (MQ=255)
                                                                                                           gATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGaacaa                                                >  2:40483/1‑141 (MQ=255)
                                                                                                           gATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGaacaa                                                <  1:40483/141‑1 (MQ=255)
                                                                                                           gATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt                                          >  2:267365/1‑147 (MQ=255)
                                                                                                           gATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt                                          >  4:257963/1‑147 (MQ=255)
                                                                                                             tataCGCGGCAAACTTGAACGACATCAAGTCGCGCACCTGCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCAGTCATGAACAACACGATatg                                       >  6:277798/1‑146 (MQ=255)
                                                                                                                           ttGAACGACATCAAGTCGCGCACCTCCGCAATACTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTa                         >  5:80522/1‑148 (MQ=255)
                                                                                                                             gAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACa                       >  6:142388/1‑148 (MQ=255)
                                                                                                                               aCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATAc                    <  3:338285/149‑1 (MQ=255)
                                                                                                                                     tCAAGTCGCGCACCTCCGCAATATTGGTATCGGCCATATTACGTAACATGCCGTCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACTCCAGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAg              >  3:310979/1‑149 (MQ=255)
                                                                                                                                       acgccggcatgtTCCGTAATATGGCCGAGACCAATATTGCGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAgg             <  1:66996‑M1/136‑1 (MQ=255)
                                                                                                                                               cACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACg    >  6:49348/1‑149 (MQ=255)
                                                                                                                                                 ccTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTg  <  5:135727/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
ACACAGGCACCACTGACCACCAACTTACCCAGCAGCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTG  >  NC_002947/5211474‑5211767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.