New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5211621 =	42 (0.710)	4 (0.070)	4/250	NT	8.7%	coding (329/1638 nt)	PP_4592	metal dependent hydrolase
	?	NC_002947	5211652 =	43 (0.750)					coding (298/1638 nt)	PP_4592	metal dependent hydrolase

GCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATC  >  NC_002947/5211508‑5211794                                                                                                                                                  |                                                                                                                                               gttaattgccttccggtatgtagtgaagccggtacttatcgtgttgttcatgagtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgtTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATg                                                                                                                                            <  2:66996‑M1/36‑1 (MQ=255)  cTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGc                                                                                                                                           >  2:352660/1‑149 (MQ=255)      cgGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGc                                                                                                                                       <  7:192976/149‑1 (MQ=255)         tGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGt                                                                                                                                     >  4:64217/1‑148 (MQ=255)          ccttccggtatgtagtgaagccggtacttatcgtgttgttcatgagtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgcaatattggtctcggccatattacggaACATGCCGGCGt                                                                                                                                     <  1:66996‑M2/12‑1 (MQ=255)                     tAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATaa                                                                                                                               >  1:89812/1‑142 (MQ=255)                     tAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATaa                                                                                                                               <  2:89812/142‑1 (MQ=255)                     tAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGcc                                                                                                                        <  8:8027/149‑1 (MQ=255)                                cgcCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTgg                                                                                                                 <  6:141578/145‑1 (MQ=255)                                 gcCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCAt                                                                                                            <  8:146154/149‑1 (MQ=255)                                 gcCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCAt                                                                                                            <  4:368226/149‑1 (MQ=255)                                 gcCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCAt                                                                                                            <  7:94652/149‑1 (MQ=255)                                      ccACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGaa                                                                                                         <  1:352660/147‑1 (MQ=255)                                       cacaGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGt                                                                                                       >  6:135727/1‑148 (MQ=255)                                        acaGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATaa                                                                                                                               >  2:280872/1‑123 (MQ=255)                                        acaGCAGCACCGATGGCAGCACACCCAGCAGCAGGAAATACTCGGCAAACTTGAACGACATCAAGTCGCTCACCTCCGCAATATTGGTATCGGCCA‑TATTACGGAACATGCCGTCTTCAATAAGTACGCCGTAATGGTTCATGAAGt                                                                                                       >  2:306739/1‑147 (MQ=255)                                            cagcaCCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCa                                                                                                 <  3:64217/149‑1 (MQ=255)                                                      ggCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTGCATGAAGTCAGCCACGCCCgcgc                                                                                        >  6:282826/1‑148 (MQ=255)                                                         agcaCACCCAGCAGCACCATATACGCGGAAAAATTGAACGACATAAAGTCGCGCACCTCCGCAAAATTGGTATCTCCCA‑TAATACGGAACATTCCGGCTACAATAAGTACGCCGTACTGGATCATGAAGTAAGAAACGCCCGCGCCAc                                                                                     >  8:216286/1‑148 (MQ=255)                                                             cacCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAAt                                                                                                                                 <  7:128208/100‑1 (MQ=255)                                                             cacCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAAt                                                                                                                                 >  8:128208/1‑100 (MQ=255)                                                              acCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTa                                                                                                                     >  4:279218/1‑111 (MQ=255)                                                              acCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCa                                                                                                             >  8:90063/1‑119 (MQ=255)                                                              acCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATg                                                                                >  6:132021/1‑148 (MQ=255)                                                                ccAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGaa                                                                              >  1:157414/1‑148 (MQ=255)                                                                ccAGAAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGaa                                                                              >  4:338285/1‑148 (MQ=255)                                                                       cagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGa                                                                      <  5:132021/149‑1 (MQ=255)                                                                        agGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt                                                                     <  8:212654/149‑1 (MQ=255)                                                                          ttcatgaaccagtacggcgtacttattgacgccggcatgtTCCGCAATATTGGTCTCGGCCA‑TATTACGGAAc                                                                                                                                               >  5:139575‑M1/41‑73 (MQ=255)                                                                          ttcatgaaccagtacggcgtacttattgacgccggcatgtTCCGCAATATTGGTCTCGGCCA‑TATTACGGAAc                                                                                                                                               <  6:139575‑M1/33‑1 (MQ=255)                                                                          gATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGaacaa                                                                           >  2:40483/1‑141 (MQ=255)                                                                          gATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGaacaa                                                                           <  1:40483/141‑1 (MQ=255)                                                                          gATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt                                                                     >  4:257963/1‑147 (MQ=255)                                                                          gATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt                                                                     >  2:267365/1‑147 (MQ=255)                                                                            tataCGCGGCAAACTTGAACGACATCAAGTCGCGCACCTGCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCAGTCATGAACAACACGATatg                                                                  >  6:277798/1‑146 (MQ=255)                                                                                          ttGAACGACATCAAGTCGCGCACCTCCGCAATACTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTa                                                    >  5:80522/1‑148 (MQ=255)                                                                                            gAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACa                                                  >  6:142388/1‑148 (MQ=255)                                                                                              aCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATAc                                               <  3:338285/149‑1 (MQ=255)                                                                                                    tCAAGTCGCGCACCTCCGCAATATTGGTATCGGCCA‑TATTACGTAACATGCCGTCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACTCCAGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAg                                         >  3:310979/1‑149 (MQ=255)                                                                                                      acgccggcatgtTCCGTAATAT‑GGCCGAGACCAATATTGCGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAgg                                        <  1:66996‑M1/136‑1 (MQ=255)                                                                                                              catgttccgtaatatggccgagaccaatattgcggaACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAAc                                <  2:66996‑M2/113‑1 (MQ=255)                                                                                                              cACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACg                               >  6:49348/1‑149 (MQ=255)                                                                                                                ccTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTg                             <  5:135727/149‑1 (MQ=255)                                                                                                                 gttccgtaatatggccgagaccaatattgcggaACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGaa                                                                                                         <  6:139575‑M2/40‑1 (MQ=255)                                                                                                                 gttccgtaatatggccgagaccaatattgcggaACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGaa                                                                                                         >  5:139575‑M2/34‑73 (MQ=255)                                                                                                                    CGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTg                             >  5:173090‑M1/1‑145 (MQ=255)                                                                                                                    CGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTg                             <  6:173090‑M1/145‑1 (MQ=255)                                                                                                                    CGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAgg                          >  2:157414‑M1/1‑148 (MQ=255)                                                                                                                           ttGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGAtt                  <  1:267365/149‑1 (MQ=255)                                                                                                                                    gCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGaa                                          <  1:693/116‑1 (MQ=255)                                                                                                                                    gCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGaa                                          >  2:693/1‑116 (MQ=255)                                                                                                                                    gCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc                       <  2:276266/135‑1 (MQ=255)                                                                                                                                    gCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc                       >  1:276266/1‑135 (MQ=255)                                                                                                                                    gCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGaa         <  5:142388/149‑1 (MQ=255)                                                                                                                                         tatTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAagag      >  7:99765/1‑148 (MQ=255)                                                                                                                                           ttACTGAACATGCCGGCGTCAATAAGTACGCAGTACTGGTTCATGAAGTAAGACACGCCCGCGCCACTCATGAACAACACGATAATTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCAt   <  1:306739/149‑1 (MQ=255)                                                                                                                                             aCGGAACATGCCGTCGTCAATAAGTACGACGTACTTGTTCATGAAGTAAGCCACGCCCTCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATc  <  7:216286/148‑1 (MQ=255)                                                                                                                                             aCGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCAt   >  2:137446/1‑147 (MQ=255)                                                                                                                                             aCGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATc  <  5:49348/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               GCTCGCGGTGCCACGGGCGGTAGGCGATCTGCGCCTTCCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCA‑TATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATC  >  NC_002947/5211508‑5211794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.