New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5273028	43 (0.730)	3 (0.050)	3/244	NT	6.1%	coding (175/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
	?	NC_002947	= 5273084	51 (0.920)					coding (231/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G

GACCTGATCCGCCAGCCGGAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTCGTACCGGCCAGCGAACACTGGCAAGGCCC  >  NC_002947/5272887‑5273176                                                                                                                                              |                                                                                                                                                     gACCTGATCCGCCAGCCGGAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCg                                                                                                                                                >  6:349547/1‑148 (MQ=255)    cTGATCCGCCAGCCGGAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAg                                                                                                                                            >  5:110779/1‑149 (MQ=255)      gATCCGCCAGCCGGAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGcc                                                                                                                                          >  1:159346/1‑149 (MQ=255)           gCCAGCCGGAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCa                                                                                                                                     <  6:110779/149‑1 (MQ=255)             cAGCCGGAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACCCGATCAGGCTCCCGACGCCAATTGCCGGGTACTGGTGCTCTATGACCGCTTCGGTGCCCTGGCCGCCAGCCTTGCggg                                                                                                                                   >  8:158998/1‑149 (MQ=255)               gCCGGAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGcc                                                                                                                                 <  5:190332/149‑1 (MQ=255)                  ggAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGc                                                                                                                              <  5:4800/149‑1 (MQ=255)                           cAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAggtgg                                                                                                                     >  4:72635/1‑149 (MQ=255)                            aaCGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTg                                                                                                                                       <  2:112783/130‑1 (MQ=255)                            aaCGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTg                                                                                                                                       >  1:112783/1‑130 (MQ=255)                            aaCGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAggtggt                                                                                                                    <  5:349547/149‑1 (MQ=255)                              cGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAggtggt                                                                                                                    >  2:91023/1‑147 (MQ=255)                                  ccGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTcagcag                                                                                                              >  4:310810/1‑149 (MQ=255)                                         aGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTTCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGAc                                                                                                       <  3:288594/149‑1 (MQ=255)                                         aGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGAc                                                                                                       >  3:357440/1‑149 (MQ=255)                                             cTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCcaggtgcgagtcaccgctgctgaccacctgcagctggcctgcaaggcttgc                                                                                                   >  4:213039‑M1/1‑98 (MQ=255)                                                cGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCACTGACAGCTTCGGTGCCCAGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCAcc                                                                                                >  7:352198/1‑149 (MQ=255)                                                   tGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGg                                                                                             >  3:72635‑M2/1‑148 (MQ=255)                                                     ccgccgACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGgg                                                                                            >  3:310810‑M2/1‑146 (MQ=255)                                                         cgacgaGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGgggcacc                                                                                       >  5:147948‑M2/1‑142 (MQ=255)                                                          gacgaGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCt                                                                                      <  2:159346/149‑1 (MQ=255)                                                            cgaGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCcaggtgcgagtcaccgctgctgaccacctgcagctggcctgcaaggcttgcggccagggcaccgaa                                                                                    <  3:213039‑M1/149‑67 (MQ=255)                                                             gactaccTGCTTGCGCAGGTACACGATCAGGCACCCGACGGCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCcaggtgcgtgtcaccgctgctgaccacctgcagctggcctgcaaggcttgcggccagggcaccgaag                                                                                   <  8:130664‑M1/146‑68 (MQ=255)                                                                  ccTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTg                                                                               >  8:3452/1‑148 (MQ=255)                                                                   cTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTg                                                                                     >  7:183462/1‑141 (MQ=255)                                                                   cTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTg                                                                                     <  8:183462/141‑1 (MQ=255)                                                                   cTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTgg                                                                              >  7:233745/1‑148 (MQ=255)                                                                   cTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCGCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTgg                                                                              >  6:259728/1‑148 (MQ=255)                                                                             aGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTg                                                                   <  8:233745/149‑1 (MQ=255)                                                                                  cacGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGgcgcg                                                              >  3:57842/1‑149 (MQ=255)                                                                                   acGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGTAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGgcgcg                                                              >  4:350503/1‑148 (MQ=255)                                                                                   acGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGTAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGgcgcg                                                              >  4:345185/1‑148 (MQ=255)                                                                                   acGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGgcgcg                                                              >  8:192040/1‑148 (MQ=255)                                                                                       tCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAAt                                                          <  4:57842/148‑1 (MQ=255)                                                                                       tCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATg                                                         <  7:192040/149‑1 (MQ=255)                                                                                          ggCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGcc                                                      >  1:307697/1‑149 (MQ=255)                                                                                              cccGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTTGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGcc                                                  <  1:91023/149‑1 (MQ=255)                                                                                               ccGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCg                                                 >  8:79127/1‑149 (MQ=255)                                                                                               ccGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCg                                                 >  2:226935/1‑149 (MQ=255)                                                                                               ccGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCg                                                 >  2:342014/1‑149 (MQ=255)                                                                                                                 aaCTGGTGGTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTc                               <  2:287274/148‑1 (MQ=255)                                                                                                                            aaTGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTCGTACCGGCCAg                    >  2:189219/1‑149 (MQ=255)                                                                                                                              tGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTCGTACCGGCCAGc                   >  5:368237/1‑148 (MQ=255)                                                                                                                                  aGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGACAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTCGTACCGGCCAGCGAaca              >  7:162755/1‑149 (MQ=255)                                                                                                                                    cTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACACGCACCTGgggcaccgaagctgtcattgagcaccagtacccggcaattgccgtcgggtgcctgatcgtgtacctgcgcaagcaggtagtc            <  8:130664‑M2/149‑83 (MQ=255)                                                                                                                                     ttCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGgggcaccgaagctgtcattgagcaccagtacccggcaattggcgtcgggtgcctgatcgtgtagctgcgcaagcaggtactcg           <  3:213039‑M2/149‑84 (MQ=255)                                                                                                                                      tCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTCGTACCGGCCAGCGAACACTgg          >  3:84710/1‑149 (MQ=255)                                                                                                                                       cGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAg                                                                         <  7:29653/85‑1 (MQ=255)                                                                                                                                       cGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAg                                                                         >  8:29653/1‑85 (MQ=255)                                                                                                                                        ggTGCCCcaggtgcgagtcaccgctgctgaccacctgcagctggcctgcaaggcttgcggccagggcaccgaagctgtcattgagcaccagtacccggcaattggcgtcgggtgcctgatcgtgtagctgcgcaagcaggtactcgtcg        >  5:147948‑M1/1‑7 (MQ=255)                                                                                                                                        ggTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGTAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTCGTACCGGCCAGCGAACACTGGc         <  3:345185/148‑1 (MQ=255)                                                                                                                                        ggTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGTAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTCGTACCGGCCAGCGAACACTGGc         <  3:350503/148‑1 (MQ=255)                                                                                                                                             cccaggtgcgagtcaccgctgctgaccacctgcagctggcctgcaaggcttgcggccagggcaccgaagctgtcattgagcaccagtacccggcaattggcgtcgggtgcctgatcgtgtagctgcgcaagcaggtactcgtcggcgg    >  3:310810‑M1/1‑2 (MQ=255)                                                                                                                                              ccaggtgcgagtcaccgctgctgaccacctgcagctggcctgcaaggcttgcggccagggcaccgaagctgtcattgagcaccagtacccggcaattggcgtcgggtgcctgatcgtgtagctgcgcaagcaggtactcgtcggcggca  >  3:72635‑M1/1‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     GACCTGATCCGCCAGCCGGAGCAGGCCAACGACCCGTTGCAGGCCTTCGATGCCGCCGACGAGTACCTGCTTGCGCAGCTACACGATCAGGCACCCGACGCCAATTGCCGGGTACTGGTGCTCAATGACAGCTTCGGTGCCCTGGCCGCAAGCCTTGCAGGCCAGCTGCAGGTGGTCAGCAGCGGTGACTCGCACCTGGGGCACCTGGCCCTGGAAAAGAACCTGGCGCGCAATGGCCTGCCGTTCGACAGTGTGCCGTTCGTACCGGCCAGCGAACACTGGCAAGGCCC  >  NC_002947/5272887‑5273176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.