New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 538051048 (0.820)3 (0.050) 3/248 NT 5.8% coding (92/405 nt) fur ferric iron uptake global transcriptional repressor Fur
?NC_002947 = 5380557 52 (0.920)coding (45/405 nt) fur ferric iron uptake global transcriptional repressor Fur

TCGAACACTGCATGACCGCCGTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTTCTCTTAATACGGGTATGATCGG  >  NC_002947/5380363‑5380657
                                                                                                                                                   |                                                                                                                                                    
tCGAACACTGCATGACCGCCGTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACg                                                                                                                                                     >  6:312/1‑149 (MQ=255)
tCGAACACTGCATGACCGCCGTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGAC                                                                                                                                                      >  3:112365‑M1/1‑148 (MQ=255)
  gAACACTGCATGACCGCCGTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACgc                                                                                                                                                   <  8:305572/148‑1 (MQ=255)
  gAACACTGCATGACCGCCGTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGAC                                                                                                                                                      <  4:112365‑M1/146‑1 (MQ=255)
        tGCATGACCGCCGTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCGCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCgg                                                                                                                                            >  3:321331/1‑149 (MQ=255)
          cATGACCGCCGTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCCCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCgg                                                                                                                                            >  2:278592/1‑147 (MQ=255)
                cgccgTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTc                                                                                                                                     >  2:26036/1‑148 (MQ=255)
                  ccgTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAg                                                                                                                                  >  8:345803/1‑149 (MQ=255)
                          gTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTTACGCTGCTCGGTAGAGTCGAGCATCTGaa                                                                                                                          <  1:26036/149‑1 (MQ=255)
                          gTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGaa                                                                                                                          <  4:321331/149‑1 (MQ=255)
                           ttGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAg                                                                                                                         >  5:111374/1‑149 (MQ=255)
                                 cGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCtt                                                                                                                   <  5:144231/149‑1 (MQ=255)
                                  gAACCACCAGACCCGCCGCCTCGAACTGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGa                                                                                                                 <  4:51206/149‑1 (MQ=255)
                                      caccaGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACcctgcctcgagtcaagatccttcagatgctcgactctac                                                                                                               >  4:124972‑M1/1‑110 (MQ=255)
                                      caccaGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATc                                                                                                                     <  3:291159/142‑1 (MQ=255)
                                      caccaGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATc                                                                                                                     >  4:291159/1‑142 (MQ=255)
                                         caGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAg                                                                                                           <  4:345768/149‑1 (MQ=255)
                                            aCCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTc                                                                                                              <  8:183150/143‑1 (MQ=255)
                                            aCCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTc                                                                                                              >  7:183150/1‑143 (MQ=255)
                                              ccgccgCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGaa                                                                                                                          >  3:117554/1‑129 (MQ=255)
                                              ccgccgCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGaa                                                                                                                          <  4:117554/129‑1 (MQ=255)
                                              ccgccgCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAgg                                                                                                      <  7:345803/149‑1 (MQ=255)
                                              ccgccgCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAgg                                                                                                      <  6:287736/149‑1 (MQ=255)
                                               cgccgcCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGg                                                                                                     <  5:206229‑M2/149‑2 (MQ=255)
                                                   gccTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACcctgcctcgagtcaagatccttcagatgctcgactctaccgagcagcgtcac                                                                                                  <  3:124972‑M1/149‑53 (MQ=255)
                                                     cTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCACCGCCTTGTAGACATCCTCTGCACTCATGTGACGTCTGCTCGGTAGAGTCGAGCATGTGAAGGATCTTGACTCGAGGCAGGGTCAcc                                                                                                <  1:278592/149‑1 (MQ=255)
                                                        gAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTTCACTCATGTGACcctgcctcgagtcaagatccttcagatgctcgactctaccgagcagcgtcacatga                                                                                              <  6:267817‑M1/148‑57 (MQ=255)
                                                        gAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTga                                                                                            <  6:206229/149‑1 (MQ=255)
                                                        gAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTga                                                                                            <  1:351509/149‑1 (MQ=255)
                                                                   gCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTg                                                                                 >  3:176689/1‑149 (MQ=255)
                                                                       gcgATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTgcgc                                                                              >  8:291034/1‑148 (MQ=255)
                                                                          aTAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAAtt                                                                          <  6:111374/149‑1 (MQ=255)
                                                                          aTAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAAtt                                                                          <  5:291510/149‑1 (MQ=255)
                                                                           tAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTc                                                                         >  7:316690/1‑149 (MQ=255)
                                                                              aCGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGa                                                                                                            >  6:101530/1‑111 (MQ=255)
                                                                              aCGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGa                                                                                                            <  5:101530/111‑1 (MQ=255)
                                                                                ggTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAgg                                                                                                          <  6:20575/111‑1 (MQ=255)
                                                                                ggTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAgg                                                                                                          >  5:20575/1‑111 (MQ=255)
                                                                                    gCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCt                                                                                                                    >  2:210373/1‑97 (MQ=255)
                                                                                    gCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCt                                                                                                                    <  1:210373/97‑1 (MQ=255)
                                                                                    gCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTAtttt                                                                 >  4:333188/1‑148 (MQ=255)
                                                                                                   tCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGCGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCAAGGTCAGCtt                                                 >  3:210803/1‑149 (MQ=255)
                                                                                                          ccTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGcc                                          <  2:319055/149‑1 (MQ=255)
                                                                                                                tCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGAtgct                                    >  6:95120/1‑149 (MQ=255)
                                                                                                                        ttGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCaa                                                              >  4:13243/1‑115 (MQ=255)
                                                                                                                        ttGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCaa                                                              <  3:13243/115‑1 (MQ=255)
                                                                                                                             gACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTtc                       >  1:90683/1‑149 (MQ=255)
                                                                                                                               cATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTtctc                     <  3:333188/149‑1 (MQ=255)
                                                                                                                                aTCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTTctct                    >  5:244769/1‑149 (MQ=255)
                                                                                                                                aTCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTTctct                    >  2:245188/1‑149 (MQ=255)
                                                                                                                                  ccTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATgg                                                        >  6:309111/1‑111 (MQ=255)
                                                                                                                                        cACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTTCTCTTAATAc              <  1:245188/147‑1 (MQ=255)
                                                                                                                                        cACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTTCTCTTAATACgg            <  8:316690/149‑1 (MQ=255)
                                                                                                                                          cTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTTCTCTTAATACggg           >  7:82253/1‑148 (MQ=255)
                                                                                                                                           tCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGgtcacatgagtgaagaggatgtctacaaggcgctgatggaggctggcgaggatgtaggcctggccaccgtctatcgcgtgctgacccagttc          <  6:267817‑M2/148‑93 (MQ=255)
                                                                                                                                             aTGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATg                                                         <  6:3756/99‑1 (MQ=255)
                                                                                                                                             aTGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATg                                                         >  5:3756/1‑99 (MQ=255)
                                                                                                                                               gtgACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGgtcacatgagtgcagaggatgtctacaaggcgctgatggaggctggcgaggatgtaggcctggccaccgtctatcgcgtgctgacccagttcgaggc     <  3:124972‑M2/149‑98 (MQ=255)
                                                                                                                                               gtgACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTTCTCTTAATACGGGTATGAt     >  2:340595/1‑149 (MQ=255)
                                                                                                                                                   ccctgcctcgagtcaagatccttcagatgctcgactctaccgagcagcgtcacatgagtgcagaggatgtctacaaggcgctgatggaggctggcgaggatgtaggcctggccaccgtctatcgcgtgctgacccagttcgaggcggcg  <  5:206229‑M1/149‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TCGAACACTGCATGACCGCCGTCGAAGTTGTGGCGAACCACCAGACCCGCCGCCTCGAACTGGGTCAGCACGCGATAGACGGTGGCCAGGCCTACATCCTCGCCAGCCTCCATCAGCGCCTTGTAGACATCCTCTGCACTCATGTGACGCTGCTCGGTAGAGTCGAGCATCTGAAGGATCTTGACTCGAGGCAGGGTCACCTTGAGACCGGCTTTGCGCAATTCGCTATTTTCAACCATGGTCAGCTTTCTCGCCGATGCTGCTTCGCAGCTTCTCTTAATACGGGTATGATCGG  >  NC_002947/5380363‑5380657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.