New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5474528 =	49 (0.830)	3 (0.050)	3/244	NT	5.8%	coding (267/1272 nt)	proA	gamma‑glutamyl phosphate reductase
	?	NC_002947	5474579 =	51 (0.920)					coding (216/1272 nt)	proA	gamma‑glutamyl phosphate reductase

GCTGGCGGCATCAATGGTCACGTTCGGACGCGATTCATAGATGATCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCGGCACGGGCAGCATCCAGCGCGT  >  NC_002947/5474381‑5474676                                                                                                                                                    |                                                                                                                                                     gCTGGCGGCATCAATGGTCACGTTCGGACGCGATTCATAGATGATCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCt                                                                                                                                                     >  4:219208/1‑149 (MQ=255)  gccgtgccagcaccgcgcagaagaaccgcgccctgcaagccgccgccgccgcgctggatgctgcccgtgccgagctcaccgctgccaacgagctggacctggccgccggccgcgccagtggcctggagcccgcactgctcgatcgtCTg                                                                                                                                                    <  3:240962‑M1/3‑1 (MQ=255)      cggcATCAATGGTCACGTTCGGACGCGATTCATAGATGATCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGgcgc                                                                                                                                                <  4:139037/149‑1 (MQ=255)              aTGGTCACGTTCGGACGCGATTCATAGATGATCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGt                                                                                                                                        >  5:128805/1‑149 (MQ=255)                     cGTTCGGACGCGATTAATAGATGAGCCCTATCTCCGCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATTGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATg                                                                                                                                 <  6:263246/149‑1 (MQ=255)                               cgATTCATAGATGATCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTATCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATAc                                                                                                                       <  7:155902/149‑1 (MQ=255)                                     aTAGATGATCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCg                                                                                                                 >  8:126829/1‑149 (MQ=255)                                         atgatCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGt                                                                                                             >  8:325921/1‑149 (MQ=255)                                           gatCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGt                                                                                                             >  5:14557/1‑147 (MQ=255)                                                 gATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCa                                                                                                     <  3:304437/149‑1 (MQ=255)                                                   cgcgctggatgctgcccgtgccgagctcaccgctgccaacgagctggacctggccgccggccgcgccagtggcctggagcccgcactgctcgatcgtCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGa                                                                                                   >  6:49973‑M1/98‑149 (MQ=255)                                                    cACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGa                                                                                                   <  2:350412/148‑1 (MQ=255)                                                       ccccAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGAt                                                                                               >  3:175828/1‑149 (MQ=255)                                                       ccccAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGAt                                                                                               >  5:378378/1‑149 (MQ=255)                                                       ccccAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGAt                                                                                               >  3:310269/1‑149 (MQ=255)                                                         ccAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGTTGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATc                                                                                              >  1:247884/1‑148 (MQ=255)                                                          cAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGa                                                                                            <  7:325921/149‑1 (MQ=255)                                                           aGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAg                                                                                           <  6:14557/149‑1 (MQ=255)                                                                  tACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCg                                                                                    >  4:316764/1‑149 (MQ=255)                                                                         cTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTc                                                                               >  6:334580/1‑147 (MQ=255)                                                                          ttGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAg                                                                            >  4:70946/1‑149 (MQ=255)                                                                            gCCTACCGGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGa                                                                                            >  6:209082/1‑131 (MQ=255)                                                                            gCCTACCGGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGa                                                                                            <  5:209082/131‑1 (MQ=255)                                                                             ccTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGc                                                                          <  3:70946/148‑1 (MQ=255)                                                                              cTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCAt                                                                                                                                  >  4:126889/1‑91 (MQ=255)                                                                              cTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGTCAGACGATc                                                                                              <  3:330130/127‑1 (MQ=255)                                                                              cTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGTCAGACGATc                                                                                              >  4:330130/1‑127 (MQ=255)                                                                                aCCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACt                                                                      >  4:212213/1‑149 (MQ=255)                                                                                 ccTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCAc                                                                       <  3:219208/147‑1 (MQ=255)                                                                                 ccTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCAc                                                                       <  7:126829/147‑1 (MQ=255)                                                                                  cTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTgg                                                                    >  4:240962/1‑149 (MQ=255)                                                                                       caacgagctggacctggccgccggccgcgccagtggcctggagcccgcactgctcgatcgtCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAg                                                                                                    >  6:68920‑M1/62‑112 (MQ=255)                                                                                       caacgagctggacctggccgccggccgcgccagtggcctggagcccgcactgctcgatcgtCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAg                                                                                                    <  5:68920‑M1/51‑1 (MQ=255)                                                                                        gCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGcggc                                                              >  5:358573/1‑149 (MQ=255)                                                                                        gCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGcggc                                                              >  7:93395/1‑149 (MQ=255)                                                                                          ccGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCTGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGcggccg                                                            >  1:156146/1‑149 (MQ=255)                                                                                           cGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGcggccgg                                                           <  6:358573/149‑1 (MQ=255)                                                                                             aTGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCCCCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCcggcg                                                         >  6:272346/1‑149 (MQ=255)                                                                                             aTGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCcggcg                                                         <  8:93395/149‑1 (MQ=255)                                                                                                     tAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCg                                                                                    <  1:219758/114‑1 (MQ=255)                                                                                                     tAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCg                                                                                    >  2:219758/1‑114 (MQ=255)                                                                                                     tAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTc                                                 <  2:247884/149‑1 (MQ=255)                                                                                                        cTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAg                                              >  8:105083/1‑149 (MQ=255)                                                                                                           aTGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTc                                           >  6:206778/1‑149 (MQ=255)                                                                                                           aTGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTc                                           <  5:206778/149‑1 (MQ=255)                                                                                                              tCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGtt                                        <  6:128805/149‑1 (MQ=255)                                                                                                                gcgGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCTGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTgg                                      <  2:156146/149‑1 (MQ=255)                                                                                                                        cACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTg                              <  3:212213/149‑1 (MQ=255)                                                                                                                         aCCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGt                               >  4:328807/1‑147 (MQ=255)                                                                                                                           cGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGc                           >  2:23696/1‑149 (MQ=255)                                                                                                                                 ggTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCt                          >  5:244098/1‑144 (MQ=255)                                                                                                                                 ggTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCt                          <  6:244098/144‑1 (MQ=255)                                                                                                                                   tCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCGGCACg                   <  1:23696/149‑1 (MQ=255)                                                                                                                                         aGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCGGCACGGgcagc             <  3:316764/149‑1 (MQ=255)                                                                                                                                               gCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCCGCACGGGCAGCATCCAg       >  8:329883/1‑149 (MQ=255)                                                                                                                                                ccACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCGGCACGGGCAGCATCCAgc      >  3:156229/1‑149 (MQ=255)                                                                                                                                                    CTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGTCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCGGCACGGGCAGCATCCa        <  2:218860‑M1/143‑1 (MQ=255)                                                                                                                                                    CTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGTCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCGGCACGGGCAGCATCCa        >  1:218860‑M1/1‑143 (MQ=255)                                                                                                                                                    CTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCGGCACGGGCAGCATCCAGCGCGt  >  3:328807‑M1/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCTGGCGGCATCAATGGTCACGTTCGGACGCGATTCATAGATGATCCCGATCACCCCCAGCGGGGTACGCATCTTGCCTACCTGAATGCCCGATGGACGGTAGCTCATGTCGCGGATGGCACCGACTGGGTCCGGCAGGCTGGCCACCTGGCGCAAGCCGGTGATCATGCCGTCGATACGCGCCGGGGTCAGCGCCAGACGATCGAGCAGTGCGGGCTCCAGGCCACTGGCGCGGCCGGCGGCCAGGTCCAGCTCGTTGGCAGCGGTGAGCTCGGCACGGGCAGCATCCAGCGCGT  >  NC_002947/5474381‑5474676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.